Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0335 ATGGAGAGAAGCCAACCAAGGAGGCAAGTTGCTGCCATGAAACAATCCCTTTTTGATCAGGGATTATTGGATGAACAATTTATCCAGTTGGAAGAATTATCAGATGATGCTAATCCAAACTTTGTTGAAGAAATTGTCACCCTTTATTACCGTGATTCATCTCGCCTTATCTCAAGCATAGAGCAAGCACTGAAGGAGAGACACACATTGGATTTCAACAAACTGGACACACTTATGCATCAGTTCAAAGGAAGCAGTTCAAGCATCGGAGCCAAAAAGGTGAAAGCAGAGTGCACTCTCTTTAGGGAATATTGTAGGACAGGAAATGCTGAAGGATGCATGAAGACCTTCCAACAATTGAAGAAAGAATATGCTTCACTTAGAAAGAAACTTGAAGCTTATTTTCAGTTGGCTAGGCAAGCCGGACCCATGGAGACAGCATGTCGTCCAAAATAA 456 0.4123 MERSQPRRQVAAMKQSLFDQGLLDEQFIQLEELSDDANPNFVEEIVTLYYRDSSRLISSIEQALKERHTLDFNKLDTLMHQFKGSSSSIGAKKVKAECTLFREYCRTGNAEGCMKTFQQLKKEYASLRKKLEAYFQLARQAGPMETACRPK* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0335 151 PANTHER HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 4 4 147 - -
Amo19g0335 151 Pfam Hpt domain 44 128 IPR008207 GO:0000160
Amo19g0335 151 CDD HPT 42 106 IPR008207 GO:0000160
Amo19g0335 151 Coils Coil 110 137 - -
Amo19g0335 151 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 38 134 IPR008207 GO:0000160
Amo19g0335 151 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 5 140 IPR036641 GO:0000160
Amo19g0335 151 Gene3D HPT domain 1 147 IPR036641 GO:0000160
Amo19g0335 151 PANTHER - 4 147 IPR045871 GO:0000160|GO:0009927|GO:0043424
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0335 Amo-Chr19 4315827 4317908 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0335 K14490 - gmx:100526849 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0335 19 4315827 4317908 Amo09g0349 09 3975266 3977728 hybridization
Amo19g0335 19 4315827 4317908 Amo19g0335 19 4315827 4317908 PCT
Amo19g0335 19 4315827 4317908 Amo09g0349 09 3975266 3977728 PCT
Amo09g0349 09 3975266 3977728 Amo19g0335 19 4315827 4317908 PCT