Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0180 ATGGATGCAAACAATTGGAGACCTAATCAAGGCAATGAACCAACGATGGATGCAATTGATTGGAGATCTCAACTTTCGACTGATTCACGCCAAAGGATTGTCAACAAAATAATGGAAACGTTAAAAAAACATCTTCCTGTCCCTGGTGGTCCATTAGTTGAAGTTCAGAACATTGCTCAAAGGTTCGAAGAGAAAATTTATACTGCAGCAACAAGCCAGACAGATTATCTACGGAAAATATCTATGAAGATGCTCACAATTGAGACTAAATCCCAAAACACAATTGCTTCTAACAATATGCCATCAAATCAAGCTGGCCCTAGCAATAACCCTTCAGATCAAGGACTAGTTATGCAGCAACATTCTATTAATTTGCCCAATCAGCCGCAGCAGCGACAACAGATTCTATCTCAAAACATTCAAAGCAGCAATGTTTCATCTCAACCTAACCTTCCACCCGTATCTAGTTTGGCCCAGACGAGCAGCCAAAATATTGGCCAGAATTCCAACATACAGAATATGACTGGGCAGAATACAGTGGGAAGCACAATTGGCCAAAATTCCAATGTGCTGGATATGTTTTCTGGATCTCAGAGACAGATGACAGGAAGGCAGCAGGTTGTTCCTCAACAACAACAGCAACAGCCACAGAATGCACAGCAGTATCTTTATCAGCAGCAGTTCATGAAGCCGAAGTTTCAGCTGCAATCTCAGATGCATCCGCAACAGCAGCAAAACCTACTGCAACCAAATCAGATTCAGTCTTCCTTGATGCAATCGTCTCCTCTGTCTAGCCTTCCCCAGAATCAACAATCAAATCATGTTCAGCAGTCATCTCAGTCCATGATTCAGCAAACTTCCCAAGTTATGAGGCATCAACAACAACAGAATTCTATTATTCATCAACAGCAAACACCTTTGACTCAACAGCTAATGATGCCTTCGCAGCAGCAACAGCAGCTGCAGCAACTTATGGGATCACAGTCAAATGTAACAAACATGCAACATCCTCAGATGCTTGGGCCACAGAACAATGTTGGTGATATACAGCAACAACAGAGGTTGCTTTCACAACAGAACAATCTTACAAATTTGCAACAGCTGCAACAACAGCAACCGTTATTGAATCAGCAAAGTAACCTAGCAAATATGAATCAGCAGCAACTAGGAAATACTGTCCCTGGGTTACGGCAGCAACGGTTGATTGGACCTGAATCTGGCAACCCAGGCATGCAAACTAGGCAACACTCTGCACACATGCTGCAACAAACAAAGGTTCCATTGCAGCAGCATTCACAACAAAATGGACTGTTACCATCTCAAGCTCAGCAACCAAGGCCACAGGCAGCACAGCAGCAATTGATGCCTCAGATTAACTCTCAGCCATCACAGTCTCATCTGCAGTTGGGTTCACAGCAGCAGCCAGATCCCTTGCAGCGAGATATGCAACAAAGACTTCAACCATCAGGGTCCCTAATTGAACAGCAAAATGTTCTTGATCACCAGAAACAGATTTATCAATCTCAGAGAGCTTTTCCAGAAACATCAAGTTCTCTGGATTCTCCGGTGCAGACTGTTCAGCCAAGTGGGGGTGATTGGCAAGAAGAAGTGTACCAAAAGATCAAAACCATGAAAGAAAGCTACCTGCCAGAGCTGCGTGAAATATATCAGAGGGTTGTTGTTAAATATCAGCAGCATGAATCTCTTCACCAACAAGCAAGGCCAGAACAAGCTAATAAGTTTGGGCAATTCAAAGATAGCTTGGAGAGGATGATGGAATTCCTACAGATATCCAAGAACAAAATTCAACCTGCTCTCAAGGAAAAAGTGGGAGTGTATGAGAAGCATATCGTAGGTTTCATACATAATTATAGGCCTAGGAAAGGTATGTCGTCAACACAGCTTGGGCAGCTTCCTCCTCCACATACACACCCCATGTCACAGCCACAATCCCAAGTTACTCAAGTGCAGTCTCATGAAAATCAAATAAATTCTCAGTTACACCAATCAAATTTGCCAGGTTCTGTGGCTACAATGCCACAGAATAATATTACAAGCTTGCAGCATAATTCAATTTCTGGTTTGTCAGCCGGACAGCAGAACATGATGAATTCAATGCAACCTGGTTCCAATATGGATCCTGGACAAGGGAATTCTACAAARTCCCTTCAACAGGTTCCAGTGAGCTCCCTTCAACAGAACCCTGTTAGTACTCCCCAGCAGACTAACTTGAATTCCATGTCACTGCAAGGTGGCATGAATGTCGTCCAACAAAATTTGAATATCCTTCAGGTTGGTTCCAATATGCTTCAACACCAGCAACTGAAACATCAGCAGGAGCAGAAAATGCTGCAAAATCCACAATTCAAGCAATATCAGCATCGTCAAATGATTCAGAGGCAGCAGAGCCTTCAGCAACAACAGCAGCAGCATCAACTACACCAGCCTGGAAAGCAACAATTGCCTGCAATGCAGACACATCAAATGCCGCAGCTTCCCCAGATGAACGATATAAATGATGTCAAATTCAGACAAGGAATGGGTGCTAAGCCAGGGGTACTTCAGCAACATCTTACCCCAGGCCAACACTCAACTTATTCCCATCAGCAGTTGAAACAAGGGGCTTCATTTTCAGCTTCGTCACCCCAATTCTTCCAGGCTGCATCTCCTCAGATTCCACAAAACTCATCTCCCCAGGTTGAGCAGCAAAATCATGCTGCTTCTTCTCTAACAAAAGTTGGAACTCCTCTTCAATCTTCTAACTCTCCTTTTGTGGGCCCCACTCCTTCACCTCCCTTGGCTCCATCTCCTATGCCAGCAGATTCTGAGAAGCAAGTTTCTGGTGTTTCATCAGTATCAAATGCTGCAAGTGTCGGACAACAACAGGCAGGGGCCGTAGGAGCACTGACTCAGTCTCTTGCCATTGGGACTCCTGGGATATCAGCCTCTCCTTTATTGGCAGAGTTCAGTGGTCTAGATGGTGCTCAAGGTAATGCTGCAGCTCCTTCTGGGAAGTCGACTGTTACAGAGCAGCCTATTGAACGCCTAACTAGATTGGTGAAATCGTTGTCATCTAAAGCATTAAGTGCTGCTGTTAGTGATATTGCTTCCATTGTCAGCATGAATGATAGAATAGCAGGATCAGCTCCAGGCAATGGATCCAGATCTTCTGTTGGTGAGGACTTGGTTTCCATGACTAATTTTCATCTTCAGGGTAGAAATCTTCTTACCCAAGATGCTCCCAATGGAACTAAGAAAATGAAGCGTGACACCAGTGCCAAACCCTTGAATATGGTATCATCTGATGGTGGCTTGAATGATAGTACCAAGCATTTAAGTGATTCCGAGGCTTCTGATATGGATTCAACTGCAACATCTAGTGCCAAGAGGCCAAAGATTGAGGTTAATCATGCCCTTATGGAGGAAATAAGGGATATCAATAACCAACTTGTTGACACAGTCGTAAACTTGACCAATGAAGACATTAGTTCAACTGTAGCAGCAGAAGCTGCAGAAGGCACCTTGGTTAAATGTTCTTACACTGCCATGGCTCTGAGTGCAAGCTTAAAATCCCAATATGCTTCAGCACAGTCACCAGTTCAACCCCTGCGCTTGTTTGTTCCAGCTAATTATCCTAGTGTTCCTCCTATTTTCCTAGACAAGTTTCCAGGTGAATGCAGTAAGGATGATGATGATCTTTCGGCAAAGACAAAATCTAGGTTTAGCTTATGTTTACGCTTAACGCAACCTATGTCCCTTAGGGAGATAGCAAGGACTTGGGGTGACTGTGCTCGTGCTGTTATTTCCGAACAGGCACAAAAGGTTGGTATTGGAGGAACCTTCAGCTCAAACTATGGGGGTTGGGAGGATTGCTTGACCTTTGATTGA 3888 0.4396 MDANNWRPNQGNEPTMDAIDWRSQLSTDSRQRIVNKIMETLKKHLPVPGGPLVEVQNIAQRFEEKIYTAATSQTDYLRKISMKMLTIETKSQNTIASNNMPSNQAGPSNNPSDQGLVMQQHSINLPNQPQQRQQILSQNIQSSNVSSQPNLPPVSSLAQTSSQNIGQNSNIQNMTGQNTVGSTIGQNSNVLDMFSGSQRQMTGRQQVVPQQQQQQPQNAQQYLYQQQFMKPKFQLQSQMHPQQQQNLLQPNQIQSSLMQSSPLSSLPQNQQSNHVQQSSQSMIQQTSQVMRHQQQQNSIIHQQQTPLTQQLMMPSQQQQQLQQLMGSQSNVTNMQHPQMLGPQNNVGDIQQQQRLLSQQNNLTNLQQLQQQQPLLNQQSNLANMNQQQLGNTVPGLRQQRLIGPESGNPGMQTRQHSAHMLQQTKVPLQQHSQQNGLLPSQAQQPRPQAAQQQLMPQINSQPSQSHLQLGSQQQPDPLQRDMQQRLQPSGSLIEQQNVLDHQKQIYQSQRAFPETSSSLDSPVQTVQPSGGDWQEEVYQKIKTMKESYLPELREIYQRVVVKYQQHESLHQQARPEQANKFGQFKDSLERMMEFLQISKNKIQPALKEKVGVYEKHIVGFIHNYRPRKGMSSTQLGQLPPPHTHPMSQPQSQVTQVQSHENQINSQLHQSNLPGSVATMPQNNITSLQHNSISGLSAGQQNMMNSMQPGSNMDPGQGNSTKSLQQVPVSSLQQNPVSTPQQTNLNSMSLQGGMNVVQQNLNILQVGSNMLQHQQLKHQQEQKMLQNPQFKQYQHRQMIQRQQSLQQQQQQHQLHQPGKQQLPAMQTHQMPQLPQMNDINDVKFRQGMGAKPGVLQQHLTPGQHSTYSHQQLKQGASFSASSPQFFQAASPQIPQNSSPQVEQQNHAASSLTKVGTPLQSSNSPFVGPTPSPPLAPSPMPADSEKQVSGVSSVSNAASVGQQQAGAVGALTQSLAIGTPGISASPLLAEFSGLDGAQGNAAAPSGKSTVTEQPIERLTRLVKSLSSKALSAAVSDIASIVSMNDRIAGSAPGNGSRSSVGEDLVSMTNFHLQGRNLLTQDAPNGTKKMKRDTSAKPLNMVSSDGGLNDSTKHLSDSEASDMDSTATSSAKRPKIEVNHALMEEIRDINNQLVDTVVNLTNEDISSTVAAEAAEGTLVKCSYTAMALSASLKSQYASAQSPVQPLRLFVPANYPSVPPIFLDKFPGECSKDDDDLSAKTKSRFSLCLRLTQPMSLREIARTWGDCARAVISEQAQKVGIGGTFSSNYGGWEDCLTFD* 1296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0180 1295 SUPERFAMILY Kix domain of CBP (creb binding protein) 20 91 IPR036529 GO:0003712|GO:0006355
Amo19g0180 1295 MobiDBLite consensus disorder prediction 853 953 - -
Amo19g0180 1295 MobiDBLite consensus disorder prediction 628 662 - -
Amo19g0180 1295 MobiDBLite consensus disorder prediction 799 824 - -
Amo19g0180 1295 MobiDBLite consensus disorder prediction 257 300 - -
Amo19g0180 1295 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 1 1293 IPR044661 GO:0003713|GO:0031490
Amo19g0180 1295 MobiDBLite consensus disorder prediction 141 190 - -
Amo19g0180 1295 MobiDBLite consensus disorder prediction 95 116 - -
Amo19g0180 1295 MobiDBLite consensus disorder prediction 857 924 - -
Amo19g0180 1295 MobiDBLite consensus disorder prediction 699 743 - -
Amo19g0180 1295 Gene3D Coactivator CBP, KIX domain 16 97 IPR036529 GO:0003712|GO:0006355
Amo19g0180 1295 MobiDBLite consensus disorder prediction 510 532 - -
Amo19g0180 1295 Pfam KIX domain 20 97 IPR036546 -
Amo19g0180 1295 MobiDBLite consensus disorder prediction 1094 1111 - -
Amo19g0180 1295 MobiDBLite consensus disorder prediction 405 484 - -
Amo19g0180 1295 PANTHER OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED 1 1293 - -
Amo19g0180 1295 Coils Coil 1140 1160 - -
Amo19g0180 1295 MobiDBLite consensus disorder prediction 399 484 - -
Amo19g0180 1295 MobiDBLite consensus disorder prediction 1073 1129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0180 Amo-Chr19 1972047 1980635 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0180 K14972 - gmx:100805336 1373.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0180 19 1972047 1980635 Amo09g0009 09 109632 118218 hybridization