Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0172 ATGGCTCCACAGCCGCCGCCACCATCATCATCATCATCATCATCAAGAATTTGTAGACACCAAGAGCCACATTTACCAGATGAGTGTTGGGAATTAATTTTGAAACACATCAGCGACCATCTAGATCACGAATCACTCTCCCTCGTCTCACGCCAGCTCCTTTTCCTTACCAACCGCCTCCGCACCGACCTCTCCGTTCTCGACCCTGTCCCCCCTCTCCTTCCCGCCCTCCTCCGCCGTTTTCGCAACCTGACGACCATCAAAATCACGCGCTACTTCACGGGTGACATCAACGCGCTCCTCTCCCAAATCGCTTTGTTCGACCTACCCTCACTCCGTTCCCTCGACCTGTCCCACCAACCCACCTTCCCCTCACATGGGTTGCGACAATTCTCCCAAAAGTTTCCAACTTTGAAGTCACTCAACTGTTCCTTCACGCCTCAGGATTTGGGCTTAATTGTCGAGTGCTTCCCGAACCTCGAAGAAATCGACGTGAGTTTCCCTCCGAATAATTCTGATGAGATAACAGATTATTCCCGTGTAATGGCCTTTGCTTCAGGGCTTAAGAAGCTTAGAAAGGTGAATGTTTCAGGTAACCGTAAATTTCGGAACTCTCACATTTTCACCTTGTGTCAGAATTGTCATTTTTTAGAAGAGCTTATTGTTCTTAAATCAACCAGCAAGCTTAGTGTGATAAGACAGATGGCTAACGCGATCCGTCAGAGACCCCAATTGAGGTCTTTGGCTTTTAGCGGTTCGCATGATAAGATTTCGGAGTTCATTGATGCATTGGTAAATTTGAAGGGTTTGACTTGTCTTGAGTTGTCTTGGTCGTGCATATCTGACGAGGTCTTGTGTGCTGTTGCGGAAGAAGGCCTTCCCTTGAGGAAACTCTCTCTGCAATACAGTATCGGATATGGATACCATGGGATTTCTCGCTTGTTGAGAAAGTGTAACCATTTACAATATTTAGATCTTGAGAGCACAGAATATCTGAATGATCAGCGGGTGGGTGAGTTGTCTTTGCTTCTTGGTAACTTAAACTTTGTGAAACTTAATAGGAATAGAGAGCTTACTGATTTGAGTTTGTTCGCCATAATGCGTAACTGCCCTTTGATAACTGAGATCAGGATGGAAAGTACCTGTCTTGGGAAGAAGAAGGTGGAGGAGAATTTTTTGGTTGTGAATTATTCTCATGTGAAGTTTCTCTATTTGGCTAATAATTTATGGCTTGGTGATAGAAGTCTCACTATACTTGCTTCCGTATGCCCAAACTTGGAGATAATGGATTTGAGCGATTGCGGGACCCATTCAAAGGGTGCTATTGAAGTTTTACGGAGGTGTTGTAAGATTCAACGCTTGGACTTAGCTCATTTAGGATACAAGGAGTTTCCGTTTAAGGTTAACTTTGAAGTTCCTACATTGTTTGTGTTGAATTTGTCATGGTCGATAATTGGCAATGAAGAACTCTCTCTTATTTCAAAGAATTGTTACAACTTAAAAGAACTTAAATTGGAATATTGTAGCAAAATCACGGCCAGTGGGGTAAAGCAGGTGGTAAAAGATTGCAAGCAACTAAGAATGATAAGTTTGTATTCTTGTCAAAACATATCTACTGATGTCATTGCTTGGATGTTATTGGCAAGGTCATCGTTGAGAAAAATAACATTTGCTAGTGACACGGGCCGGAGGGATCTCTCCCTACGTCATGGATGCGTTGTTGGCTGGGATCTAAGCGGTGGTTGGTTGGGACTAAGCGGTCGTTGGTTGGGATTCCGTGGGATTACTAACGTAACTGATTCTCTCTTCACCCGATAG 1818 0.44 MAPQPPPPSSSSSSSRICRHQEPHLPDECWELILKHISDHLDHESLSLVSRQLLFLTNRLRTDLSVLDPVPPLLPALLRRFRNLTTIKITRYFTGDINALLSQIALFDLPSLRSLDLSHQPTFPSHGLRQFSQKFPTLKSLNCSFTPQDLGLIVECFPNLEEIDVSFPPNNSDEITDYSRVMAFASGLKKLRKVNVSGNRKFRNSHIFTLCQNCHFLEELIVLKSTSKLSVIRQMANAIRQRPQLRSLAFSGSHDKISEFIDALVNLKGLTCLELSWSCISDEVLCAVAEEGLPLRKLSLQYSIGYGYHGISRLLRKCNHLQYLDLESTEYLNDQRVGELSLLLGNLNFVKLNRNRELTDLSLFAIMRNCPLITEIRMESTCLGKKKVEENFLVVNYSHVKFLYLANNLWLGDRSLTILASVCPNLEIMDLSDCGTHSKGAIEVLRRCCKIQRLDLAHLGYKEFPFKVNFEVPTLFVLNLSWSIIGNEELSLISKNCYNLKELKLEYCSKITASGVKQVVKDCKQLRMISLYSCQNISTDVIAWMLLARSSLRKITFASDTGRRDLSLRHGCVVGWDLSGGWLGLSGRWLGFRGITNVTDSLFTR* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0172 605 PANTHER NODULIN-LIKE PROTEIN 23 232 - -
Amo19g0172 605 SMART LRR_CC_2 188 213 IPR006553 -
Amo19g0172 605 SMART LRR_CC_2 318 343 IPR006553 -
Amo19g0172 605 SMART LRR_CC_2 109 134 IPR006553 -
Amo19g0172 605 SMART LRR_CC_2 523 550 IPR006553 -
Amo19g0172 605 SMART LRR_CC_2 497 522 IPR006553 -
Amo19g0172 605 SMART LRR_CC_2 344 369 IPR006553 -
Amo19g0172 605 PANTHER NODULIN-LIKE PROTEIN 409 549 - -
Amo19g0172 605 SUPERFAMILY RNI-like 69 385 - -
Amo19g0172 605 Gene3D Ribonuclease Inhibitor 462 572 IPR032675 -
Amo19g0172 605 Gene3D Ribonuclease Inhibitor 43 461 IPR032675 -
Amo19g0172 605 PANTHER UNCHARACTERIZED 23 232 - -
Amo19g0172 605 SUPERFAMILY RNI-like 309 558 - -
Amo19g0172 605 PANTHER UNCHARACTERIZED 409 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0172 Amo-Chr19 1856262 1858208 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0172 K10268 - gmx:100819538 448.743