Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3464 ATGGGAACACTATCTCTTCTCAAATTCTACAAACCCTTCTTCTTCTTCTCTTCGATTCCACACTCCACTCGACCCATTCTCTTCCGCAGCATTAACAACAAGAAGCAGCTTCCTTCCTCTTCTTCTTTCTCCTGCTTCAGCAGCTCTGTGGGACAATCTCAGCCGTTGACGGCGAACAGCACTTTCGCATCCAAATCGGAGGGCCAGAATCTGAAGGGTCCATCTCCCGAGGTGTGGCTGCACAACACGATGAGCAAGAAGAGAGAGCTTTTGAGACCGAAAGTGGAATCCAAGGTTGGAATGTACGTATGCGGTGTAACCGCTTATGATCTCAGCCATATTGGCCATGCTCGCGTCTACGTCAACTTCGACCTTCTTTTCAGGTACCTTAAGCATTTGGGATACGAAGTGTCTTATGTTCGCAATTTCACTGACGTAGATGACAAGATCATTGCTAGAGCAAATGAATTAGGCGAAGATCCAATCAGTTTAAGTCAACGCTACTGTGAAGAGTTCTGCCAAGACATGATAACGCTTAATTGTCTGACTCCTTCTGTGGAACCAAAAGTCTCAGAGCACATGCCCCAAATCATTGATATGATTGAGAAGATACTTAATAATGGTTATGCCTACATTGTTGATGGGGATGTTTACTATAGTGTAGAAAAGTTTCCTGAATATGGAAAATTATCTGGTCGAGATCTAGAAGACAATCGAGCTGGTGAGAGGGTAGCCGTTGATTCAAGGAAGAAACATCCTGCTGATTTTGCTCTCTGGAAGTCTGCAAAGTCAGGAGAGCCATTTTGGGAGAGTCCCTGGGGTCCTGGAAGACCTGGTTGGCACATTGAATGRAGTGCTATGAGTGCAACTTATCTTGGTTACTCTTTTGACATCCATGGTGGAGGGGTTGACCTTGTGTTTCCCCACCATGAAAATGAAATAGCTCAGAGTTGTGCTGCATGTAATAAAAGCGATATAAGCCTATGGGTACACAATGGATTTGTCACTGTTGACTCTGAGAAGATGTCTAAATCTCTGGGAAACTTTTTCACAATACGGCAGGTTGTAGACATTTATCATCCTCTGGCTTTGAGATATTTTTTGATGGGTGCGCATTATCGATCTCCAATTAACTACTCTATCATACAGCTTGAAAGTGCTTCAGACCGTATTTTTTATATATACGAGACATTGCATGAATGTGAAAGCTTTCTGAATCAACATGATCAGACAGTTAGGAAGGATTCCATCCCACCAGATACTGCAAACATTATTGATAACTTCCATAATGTTTTTGTAACCTCAATGTCTGATGATCTACACACCCCGGTTGTATTGTCTGGACTGGCTGATCCATTAAAATCAATCAATGATTTGCTGCATACTCGTCAGGGTAAAAAACGACAGTTCCGAATAGAATCACTTGCAGCTTTGGAGAAGAGCATCAGGAATGTCCTGACTATTTTAGGACTTTTGCCTACAAGTTATTCTAAGGTTCTGCAGCAGCTTAGAGAAAAAGCTTTGAAACGTGCGAACTTGACAGAAGATGAAATCTTGCAGAAAATCGAAGAACGGGCCGCTGCCAGAATACAAAAGGAGTACGCCAAATCGGACGCAATAAGAAAGGATTTGGCTGTTGTTGGGATTACTCTCATGGACAGTCCTAATGGCACAACTTGGAGGCCTACCATTCCTCTTCATCTACAAGAGCAACAAAACAATGCACCATAA 1731 0.4281 MGTLSLLKFYKPFFFFSSIPHSTRPILFRSINNKKQLPSSSSFSCFSSSVGQSQPLTANSTFASKSEGQNLKGPSPEVWLHNTMSKKRELLRPKVESKVGMYVCGVTAYDLSHIGHARVYVNFDLLFRYLKHLGYEVSYVRNFTDVDDKIIARANELGEDPISLSQRYCEEFCQDMITLNCLTPSVEPKVSEHMPQIIDMIEKILNNGYAYIVDGDVYYSVEKFPEYGKLSGRDLEDNRAGERVAVDSRKKHPADFALWKSAKSGEPFWESPWGPGRPGWHIEXSAMSATYLGYSFDIHGGGVDLVFPHHENEIAQSCAACNKSDISLWVHNGFVTVDSEKMSKSLGNFFTIRQVVDIYHPLALRYFLMGAHYRSPINYSIIQLESASDRIFYIYETLHECESFLNQHDQTVRKDSIPPDTANIIDNFHNVFVTSMSDDLHTPVVLSGLADPLKSINDLLHTRQGKKRQFRIESLAALEKSIRNVLTILGLLPTSYSKVLQQLREKALKRANLTEDEILQKIEERAAARIQKEYAKSDAIRKDLAVVGITLMDSPNGTTWRPTIPLHLQEQQNNAP* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3464 576 Gene3D - 382 562 - -
Amo18g3464 576 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 418 562 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Amo18g3464 576 Gene3D HUPs 60 380 IPR014729 -
Amo18g3464 576 CDD CysRS_core 79 380 IPR032678 -
Amo18g3464 576 PANTHER CYSTEINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 77 573 - -
Amo18g3464 576 Hamap Cysteine--tRNA ligase [cysS]. 78 563 IPR015803 GO:0004817|GO:0005524|GO:0006423
Amo18g3464 576 PANTHER CYSTEINYL-TRNA SYNTHETASE 77 573 IPR024909 -
Amo18g3464 576 Pfam tRNA synthetases class I (C) catalytic domain 94 387 IPR032678 -
Amo18g3464 576 SUPERFAMILY Nucleotidylyl transferase 78 386 - -
Amo18g3464 576 TIGRFAM cysS: cysteine--tRNA ligase 80 561 IPR015803 GO:0004817|GO:0005524|GO:0006423
Amo18g3464 576 PRINTS Cysteinyl-tRNA synthetase signature 101 112 IPR024909 -
Amo18g3464 576 PRINTS Cysteinyl-tRNA synthetase signature 297 318 IPR024909 -
Amo18g3464 576 PRINTS Cysteinyl-tRNA synthetase signature 266 284 IPR024909 -
Amo18g3464 576 PRINTS Cysteinyl-tRNA synthetase signature 137 146 IPR024909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3464 Amo-Chr18 137765284 137769633 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3464 K01883 - gmx:100786700 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g2142 08 34290685 34294685 Amo18g3464 18 137765284 137769633 hybridization