Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3456 ATGATGCAGAGACGGAGTCCTCCGAAACATAGGCACGATGGGACTTCGCCGCTGCCTCTCGGCATGGATTGGAGTCCCGCACCTCGAAAATGGAATGGGCGAGATACAGTATGGCCACACAATCATCGTACTGGTTGGAGTTACTGTGTCACAATACCTTCTTGGGTTTTCCTTCCGAAATCAAAGAATTCAGATCCTATAGTGTTCTACAGGGTGCAAGTTGGCATTCAGTCACCAGACGGGATTACAACACTGCATGTAGTACTTAGAAGGTTCAATGATTTTCTAAAGTTGTTTGCCGATGTTAAAAAGGAGTTTCCCAGGAAAAATATCCCTCCAGCACCACCCAAGGGACTCATGCGATTGAAAAGCCGGGCTTTGTTGGAAGAGAGAAAGTCCTCATTGGAGGAGTGGATCACCAAACTTTTGTCTGACATTGATATATCAAGGTGCGCTGCGGTGGCATCATTTCTTGAACTAGAAGCTGCTGCTAGATCCTCTTTCCAAGATGCAAGCCAGCAGAGCTCTGAATCAGATCCTGATTCCAATAACAGAGCTTATTCAGTTCAATCACCTCRCCATTCAAGCCTATCATTMGCTGCTGGAAGTTCATCTATTGCCTCTGATTATGGTAGTGATACYGCATATGAGCCATCTGAWCTAGGAACTCCAAGAATTGGACGMGATGACAATTCTGAAGGCGGCACAGATGATCTAACAGTAGATGAAGAGATCACAAATCCAATGGAAAAGCTTATGAAATACGGTATATCAAATATTGATGAGGGTTTGTTCATGGGTCAGACTATTCTAGAGCAATTGGAAGGCCTTCCTAGGCATAAAGTAAATGCCAGACATGTCAATTATGTTACAGAGAAGGAAAAGAATAATGGTAATTCTTATAATGCTTCACATTTAGCTAATAATTCTATGGAGCTTTTCTCTGAGACTGAGCATGCTCCTGTTATCAATCACACTCGCAAGCTTTCATCTGAGAGTATTGGGAGTGATGGTAGCTCAATACGAGGTAGTGATATGTCTAATTCTGGATTTCGAAATTCATCTGGTGATGGTTCTCATGACGTTCCTGGAGGTGCTATGGTTTCAAGACCAACAGATATTATGGGCCGTGCACAATCACAGTCTTCTGGTGATGGTCAAATAGTCCTTCCACTAGATCAACGCAATAAATTGAACAGGATTCTTTTAACCATGCAGCGAAGGCTAGTCAGTGCAAAAACTGATATGGAGGACCTTATAGTCAGATTAAATCAAGAGATAGCTGCAAAGGATTTCCTCACAACGAAGGTCAAGGATTTGGAAGTAGAACTTGAAACTACCAAACAGAAAAGTAAGGAGAACTTGCAGCAGGCTATTCTGATTGAGAGGGAAAGGTTTACGCAAATGCAGTGGGATATGGAGGAACTCCGGCGGAAGTCACTCGAAATGGAGATGAAACTGAAGTCRGAATCGGGTGGAAATTCAAGTGAGAATTTATCAAAGGATGCAGTTGTTCAGCAGAAAGATGTACTGTTGCAGAATTTAAATGCTGCTAAAGAGCAGCTGGAAATTTTGTCAAAACAGTATGGGGAGCTAGAAGTAAAGTCAAAAGCAGATGTTAAGATTCTGGTTAAAGAGGTCAAATCTCTTCGTAATACCCAAAAGGAGTTGAAGAAGGAGCTTAGTGAGTCAGTAAAGGAAAAGTGTGAAACTGAGAAACTTATTCAACTAGAAAGAGAGAGGAGGGAGCAGACAGAAACTGCTTGGCGAGAGCTGCTGCAAAAATCCCGGCTTCTTTTCAACCAGCTTCAAGAGTGCGATGTCAATCTTCCTAGCGAAGATGAAGATAGGGCAACAATCAAGAGTTCATCATCAAGTGAGACTTTTAATCAGTTAGCAGCATCTGATGGACAAATTGACTTCCTAATACGAGAGGTAGAAAACTTAGGGAAGGACTACGGAAGTGGTGCTTCTAGTGTAGATAAAACCAATAAAATTAAAGATGGTATACTCTGTGATGATGAAGTGAGAAAGATCATTGCAGATTTGTTCATGGACAATGTTAGATTGAGAAAACAGACAAACCGCATTACAAGGCAAGCTTTCAAATTGGACATGAAAGAAAATGATGCTTCTCCTACGGAAAATGTAACAAGTATTTAG 2163 0.4156 MMQRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHNHRTGWSYCVTIPSWVFLPKSKNSDPIVFYRVQVGIQSPDGITTLHVVLRRFNDFLKLFADVKKEFPRKNIPPAPPKGLMRLKSRALLEERKSSLEEWITKLLSDIDISRCAAVASFLELEAAARSSFQDASQQSSESDPDSNNRAYSVQSPXHSSLSXAAGSSSIASDYGSDTAYEPSXLGTPRIGRDDNSEGGTDDLTVDEEITNPMEKLMKYGISNIDEGLFMGQTILEQLEGLPRHKVNARHVNYVTEKEKNNGNSYNASHLANNSMELFSETEHAPVINHTRKLSSESIGSDGSSIRGSDMSNSGFRNSSGDGSHDVPGGAMVSRPTDIMGRAQSQSSGDGQIVLPLDQRNKLNRILLTMQRRLVSAKTDMEDLIVRLNQEIAAKDFLTTKVKDLEVELETTKQKSKENLQQAILIERERFTQMQWDMEELRRKSLEMEMKLKSESGGNSSENLSKDAVVQQKDVLLQNLNAAKEQLEILSKQYGELEVKSKADVKILVKEVKSLRNTQKELKKELSESVKEKCETEKLIQLERERREQTETAWRELLQKSRLLFNQLQECDVNLPSEDEDRATIKSSSSSETFNQLAASDGQIDFLIREVENLGKDYGSGASSVDKTNKIKDGILCDDEVRKIIADLFMDNVRLRKQTNRITRQAFKLDMKENDASPTENVTSI* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3456 720 MobiDBLite consensus disorder prediction 1 25 - -
Amo18g3456 720 Coils Coil 430 457 - -
Amo18g3456 720 MobiDBLite consensus disorder prediction 169 240 - -
Amo18g3456 720 Coils Coil 540 567 - -
Amo18g3456 720 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 2 713 IPR044588 GO:0015031
Amo18g3456 720 MobiDBLite consensus disorder prediction 330 356 - -
Amo18g3456 720 MobiDBLite consensus disorder prediction 374 389 - -
Amo18g3456 720 Gene3D - 48 187 IPR036871 GO:0035091
Amo18g3456 720 SMART PX_2 56 161 IPR001683 GO:0035091
Amo18g3456 720 SUPERFAMILY PX domain 41 161 IPR036871 GO:0035091
Amo18g3456 720 Pfam PX domain 87 159 IPR001683 GO:0035091
Amo18g3456 720 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 2 713 - -
Amo18g3456 720 Coils Coil 501 535 - -
Amo18g3456 720 MobiDBLite consensus disorder prediction 330 389 - -
Amo18g3456 720 MobiDBLite consensus disorder prediction 169 212 - -
Amo18g3456 720 ProSiteProfiles PX domain profile. 48 165 IPR001683 GO:0035091
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3456 Amo-Chr18 137623991 137631424 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3456 - - gmx:100792151 1094.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g3456 18 137623991 137631424 Amo18g3456 18 137623991 137631424 ECH
Amo08g2134 08 34190267 34197378 Amo18g3456 18 137623991 137631424 hybridization