Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3452 ATGGCTCCGAGCACGATTCGGAAGGCAATTGGTGCGGTGAAGGACCAAACGAGCATAGGGATTGCGAAGGTTGCGAGCAACATGGCGCCGGACTTGGAGGTTGCGATCGTGAAAGCGACGAGCCACGACGACGATCCCGCCGGCGAGAAGTACATACGCGAGATCTTGAACCTCATGTCTTACTCCCGCGGATACGTCCACGCGTGTGTCACCGCCGTGTCAAAGCGATTGGGGAAGACGCGCGACTGGATCGTTGCTCTGAAAGCTCTCATGCTGGTTCACCGACTCATGAACGAGGGTCCACCGATGTTCCAAGAAGAGATACTCTACGCGACTAGGAGAGGAACCAGGCTCCTCAACATGTCTGATTTCAGGGACGAGGCTCACTCTAGCTCATGGGATCACTCTGCTTTTGTAAGAACTTATGCTATGTATCTTGATCAACGTCTTGAGTTGATGCTTTTTGATAGGAAGAGCAGTGGCGCTGCTGGTGGAGCTGGAAGCGCTGGCGCTGGCGGAAGCGGCAGTGGTGGCGGTTTTGATGATAGGTTTGGGGGTAGGGACAATTTCCGGTCCCCTCCGCCGCGGCCTTACGAGTATGAGTACGGCGGAGGTGAATTGAAGGGAGAAGGGTATGGTTATGGGAACGGAGGGATGAGGAGGACGAGGTCGTTTGGTGATGTGACTGAGAGGGAAAATGTTGGAAGGGTTGATAAGAGTATTGTTGCTGTGACTCCGTTGAGGGACATGAAGCCGGAGAGGATTTTCGGTAAGATGGGACATTTGCAGAGGTTGCTGGATCGGTTCTTGGCTTGTAGGCCTACCGGTTTGGCCAAGAACAGCAGGATGATCTTGATTGCGTTGTACCCTGTTGTGAAGGAGAGTTTTCAGCTCTATGCTGATATCTGTGAGGTTCTTGCTGTGCTTCTTGATAAGTTCTTTGATATGGAATACCCTGATTGTGTTAAGGCCTTTGATGCTTATGCCAGCGCGGCGAAGCAGATCGACGAGCTTATTGCGTTCTTCAACTGGTGTAAGGATACAGGTGTGGCGAGATCTTCTGAGTACCCCGAGGTTCAGAGGATTACTAGCAAGCTGTTGGAGACCCTGGAGGAGTTTGTTAGGGATAGGGCCAAGAGGCCTAAGAGTCCTGAGAGGAAAGAGGAATTGCCCCCACCACCTGCAAAAGAGGAGGAACCGGAGCCGGATATGAATGAGATCAAGGCACTGCCTCCACCGGAGGATTACACCCCGCCTCCGCAGCCTGAGCCAGAGCCTAAGCCACAGCCACCACCGGTTACAGAGGACTTGGTGAATCTGAGAGATGATGCAGTCAGTGCTGATGATCAAGGTAACAGATTGGCTTTGGCACTCTTTGCCGGTGCTCCTGGTAGCAATGCTAATGGTTCTTGGCAAGCCTTCCCATCAAATGGACAGCCCGAAGTTACTTCGGCTTGGCAGACTCCAGCAGCTGAGGCCGGGAAGGCCGATTGGGAATTGGCGCTGGTAGAAACTGCTAGTAATTTATCAAGGCAGAAGCAGAATTTGGGTGGTGGTCTTGATCCCTTATTGTTGAATGGTATGTATGATCAAGGAATGGTGAGGCAGCATGTGAGCACATCACAATTGAGTGGAGGAAGTGCAAGCAGTGTGGCATTGCCGGGACCCGGAAAAACCACCACACCTGTTTTGGCTCTCCCTGCCCCAGATGGGTCAGTGCAGCCGGTGAATCAGGATCCCTTCGCGGCATCATTGACTATTCCGCCACCTTCTTATGTGCAAATGGCGGATATGGAGAAGAAGCAGCATTTACTTGTGCAGGAACAGGTTGTGTGGCAGCAGTATGCAAGGGATGGAATGCAAGGTCAATCTAGCTTGGCCAGACTAAACGGCAATGGTTACTATCCCGGAACTCCAATGCCTGCAGCAATGCCTTATGGAATGCCCCCAGTCAATGGAATGGGACCTCCCGCTGGGTATTATCACACTCCTTACTGA 1998 0.524 MAPSTIRKAIGAVKDQTSIGIAKVASNMAPDLEVAIVKATSHDDDPAGEKYIREILNLMSYSRGYVHACVTAVSKRLGKTRDWIVALKALMLVHRLMNEGPPMFQEEILYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYAMYLDQRLELMLFDRKSSGAAGGAGSAGAGGSGSGGGFDDRFGGRDNFRSPPPRPYEYEYGGGELKGEGYGYGNGGMRRTRSFGDVTERENVGRVDKSIVAVTPLRDMKPERIFGKMGHLQRLLDRFLACRPTGLAKNSRMILIALYPVVKESFQLYADICEVLAVLLDKFFDMEYPDCVKAFDAYASAAKQIDELIAFFNWCKDTGVARSSEYPEVQRITSKLLETLEEFVRDRAKRPKSPERKEELPPPPAKEEEPEPDMNEIKALPPPEDYTPPPQPEPEPKPQPPPVTEDLVNLRDDAVSADDQGNRLALALFAGAPGSNANGSWQAFPSNGQPEVTSAWQTPAAEAGKADWELALVETASNLSRQKQNLGGGLDPLLLNGMYDQGMVRQHVSTSQLSGGSASSVALPGPGKTTTPVLALPAPDGSVQPVNQDPFAASLTIPPPSYVQMADMEKKQHLLVQEQVVWQQYARDGMQGQSSLARLNGNGYYPGTPMPAAMPYGMPPVNGMGPPAGYYHTPY* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3452 665 MobiDBLite consensus disorder prediction 375 436 - -
Amo18g3452 665 PANTHER - 5 640 - -
Amo18g3452 665 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Amo18g3452 665 MobiDBLite consensus disorder prediction 165 204 - -
Amo18g3452 665 SUPERFAMILY GAT-like domain 246 376 - -
Amo18g3452 665 MobiDBLite consensus disorder prediction 412 433 - -
Amo18g3452 665 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Amo18g3452 665 Gene3D ANTH domain 239 389 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Amo18g3452 665 SMART enth_2 30 160 IPR013809 -
Amo18g3452 665 MobiDBLite consensus disorder prediction 375 405 - -
Amo18g3452 665 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 640 IPR045192 GO:0048268|GO:0072583
Amo18g3452 665 CDD ANTH_N_AP180_plant 32 152 - -
Amo18g3452 665 Pfam ANTH domain 232 376 IPR011417 GO:0005543
Amo18g3452 665 Pfam ANTH domain 31 153 IPR011417 GO:0005543
Amo18g3452 665 Gene3D - 2 156 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3452 Amo-Chr18 137249684 137252158 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3452 - - adu:107463239 1124.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g3452 18 137249684 137252158 Amo18g3452 18 137249684 137252158 ECH
Amo08g2114 08 33988554 33991581 Amo18g3452 18 137249684 137252158 hybridization