Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g2988 ATGATGGCAAAACCAGTTTCCAATTCCAATTCCCACTCACACCTAATTCCATTACTCATTTTGATCCTGTTCTTTTCCACCATCTTCCATCTCTCAGAGCAGTTACAATTTTCTCAGACCCAAACACTTCAAAACTTCCAGAACCTTCTCGGCTACCCCCAAGAACTTTTAACCCTCAACACCAACACAGACTTCTGCAACATTGAACCAACCCCACACTTCACACTCGTTTGCTATGAAGAAAATCTCACACAGCTGCATGTTGTTGGCAACGGTTTCAGTCCCAACGCATTGCCACAGAACTTCTCATCAGAAACACTATTCGCCACACTCGCCACACTCTCAAGCTTAAAAGTCCTCAGTCTCGTTTCTCTTGGTCTCTGGGGTCCAATACCTCAAACCATTTCTCAGTTATCTTCTCTTGAAATACTCAACATAAGTTCAAACCATTTCAGTGGTGTTGTTCCGTCACAGATTTCACTTCTCAAGAACCTTCAATCACTGGTTCTTGATAACAACCTTTTAGAAGGCGTTATTCCAAGCGAAATAGGGACTCTTCAAGGCTTGGCTGTGCTTAGTATGAAGAACAATTCGCTCAGTGGAACCGTTCCAGATTCAGTTAGAACATTACAAACACTGCGAGTTTTGGATTTGTCAAATAACAAAATCTCAGGGGATTTACCTAGCCTTCGCCATCTGTCGAACCTTCAAGATCTTAACCTGGAGAACAACAAATTCGGGCCTCATTTTCCATCTCTTCCAACTAAATTGGTTTCGCTTGTTCTAAAGAATAACAGCTTTAAGCTTGGTCTTCCTTCGGGTTTAGTCACTTTCTACCAGCTTCAGAAACTCGACGTTTCGCTTAACGGTTTCGTTGGGCCGTTCTTACCTGCGTTGTTATCTCTTCCTTCTCTTAATTACCTTGATGCTTCCTCAAACAAGTTCACCGGAATGCTGTTCAAGAACGACACGTGTAATGATGAGCTTGTTTTCGTGAACTTGTCTTCGAATCTGTTGAGAGGGGAACTTCCCACATGTTTGAAACCAGTGGCCAATAAGCCGGTCGCTCTATACGCCGGGAATTGTTTATCGAACGACGACGGCCGGAATCAGAACCCTGCCAGCTTCTGCAGCAACGAGGCTATTGCTGTTAAAATCATGCCTCCTCAAGAGAATCACAAGAGGACAACCGGAAAAACGGTTCTCGTGTCCAGTATGGGAGGGATAGTTGGTGGAGCATTGATTGTTGGAGTGGTTATTTTGGTAGTTAGCCGGGTTCATAAGAAGGGTAGTGTTGTAAAAACACCTGTGAAACCGACCTTGGAGATCGTTATCAGCCAGGCGAAAAAGGAAGAGGAAGACGAAGACAAAGAGGAAGAAGAAAAGGAAACGGAAAAGGAAGGCATGGTAGCTGCTTCTTCAAGATCCTTGTCCATATCCGTGTTGCAGCGGATCATGAAAAGGGTGCCGGATAAGGGCGCTGTGGAGTCGTTTACAAGGTCCATGAAGGAGCATGTCATGAACAGAATGCATAACAAAAATGGTGTGAGGACAAGTACAAGGTCTATAATAGAACATGCATCTTCAGTGAACACTGCAAAGCTGCTCACAGATGCAAGGTATATATCAGAAACAATGAAGATGGGAGCCAGCTTTCCAGCTTACAGAACCTTTGCTTTGGATGAACTGAAGGAAGCTACAAATAATTTTGATGCATCAAGTTTCGTTAGTGAGGGTCCACATGGCCAGATATATAAGGGGGTGCTCTCCGATGGAATGCCTATTACAATCAGAGGATTGAAAATGCGAAAGAGACATAGCCCTCAAAATTACATGCACCACATTGAGTTGATTTCGAAACTTCGGCATTCACACTTGATCAGTGCTCTTGGTCATTCATTTGAATGCAACCAGGATGATTCAAGCGTCAGCACTATATTCCTCATATTTGAGTTTGTTCCAAACAAGAGTTTAAGGAGTTATGTGTCTGGATCTCCTAGTGAAAAGCTTTCTTGGACGCAGAGGATATTAGCTGCGATTGGAGTGGTAAAAGGCATTCAATTCTTGCACACAGGGATAGTGCCTGGACTATATTCCAATAATCTGAAGATAACTGATGTTCTTTTGGATAACAATCTTAATGTTAAAATAAGCAGTTATAATCTGCCACTCTCTGCAGAAACTAGAAGACTGGTCACCAATGGACCTTACCCTGGATTAAAAGGAAACTTCCAAGAAAGGATAATGGATGCAGACAAGAATGATGTCTATGATATTGGGGTAATCTTGCTTGAAACCATTTTGGGTCGACCATTGATGTTCCACAATGAAGTTGGCACTCTCAAAGATCTTTTACAAGTAAGCATAAAAACTGATGATATAGCAAGGAGGAGTATTGTTGACCCAGCAGTTCACAAGGAATGCTCAAATGAATCATTAATGACAATGATGGAGATTTGTGTAAGGTGCCTCTCCAATGATCCTACTGAAAGGCCTTCTGTGGATGATGTTCTCTGGAATCTGCATTTCGCTGTGCAAGTTCAGAATTCTTGGAGGAGAGACTCTAATGATCAGAGAGGCTCACCCGCATCATCATCCTCCCATGAGACAAGAGTTGTATGA 2622 0.4279 MMAKPVSNSNSHSHLIPLLILILFFSTIFHLSEQLQFSQTQTLQNFQNLLGYPQELLTLNTNTDFCNIEPTPHFTLVCYEENLTQLHVVGNGFSPNALPQNFSSETLFATLATLSSLKVLSLVSLGLWGPIPQTISQLSSLEILNISSNHFSGVVPSQISLLKNLQSLVLDNNLLEGVIPSEIGTLQGLAVLSMKNNSLSGTVPDSVRTLQTLRVLDLSNNKISGDLPSLRHLSNLQDLNLENNKFGPHFPSLPTKLVSLVLKNNSFKLGLPSGLVTFYQLQKLDVSLNGFVGPFLPALLSLPSLNYLDASSNKFTGMLFKNDTCNDELVFVNLSSNLLRGELPTCLKPVANKPVALYAGNCLSNDDGRNQNPASFCSNEAIAVKIMPPQENHKRTTGKTVLVSSMGGIVGGALIVGVVILVVSRVHKKGSVVKTPVKPTLEIVISQAKKEEEDEDKEEEEKETEKEGMVAASSRSLSISVLQRIMKRVPDKGAVESFTRSMKEHVMNRMHNKNGVRTSTRSIIEHASSVNTAKLLTDARYISETMKMGASFPAYRTFALDELKEATNNFDASSFVSEGPHGQIYKGVLSDGMPITIRGLKMRKRHSPQNYMHHIELISKLRHSHLISALGHSFECNQDDSSVSTIFLIFEFVPNKSLRSYVSGSPSEKLSWTQRILAAIGVVKGIQFLHTGIVPGLYSNNLKITDVLLDNNLNVKISSYNLPLSAETRRLVTNGPYPGLKGNFQERIMDADKNDVYDIGVILLETILGRPLMFHNEVGTLKDLLQVSIKTDDIARRSIVDPAVHKECSNESLMTMMEICVRCLSNDPTERPSVDDVLWNLHFAVQVQNSWRRDSNDQRGSPASSSSHETRVV* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g2988 873 Gene3D Ribonuclease Inhibitor 160 251 IPR032675 -
Amo18g2988 873 Gene3D Ribonuclease Inhibitor 252 365 IPR032675 -
Amo18g2988 873 MobiDBLite consensus disorder prediction 448 470 - -
Amo18g2988 873 MobiDBLite consensus disorder prediction 852 873 - -
Amo18g2988 873 Pfam Leucine Rich repeats (2 copies) 212 245 IPR025875 -
Amo18g2988 873 Gene3D Phosphorylase Kinase; domain 1 531 652 - -
Amo18g2988 873 ProSiteProfiles Protein kinase domain profile. 570 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo18g2988 873 SMART LRR_typ_2 233 260 IPR003591 -
Amo18g2988 873 SMART LRR_typ_2 210 232 IPR003591 -
Amo18g2988 873 SMART LRR_typ_2 162 186 IPR003591 -
Amo18g2988 873 SMART LRR_typ_2 302 322 IPR003591 -
Amo18g2988 873 SMART LRR_typ_2 138 161 IPR003591 -
Amo18g2988 873 Coils Coil 441 468 - -
Amo18g2988 873 ProSiteProfiles Leucine-rich repeat profile. 212 234 IPR001611 GO:0005515
Amo18g2988 873 Gene3D Ribonuclease Inhibitor 38 159 IPR032675 -
Amo18g2988 873 Gene3D Transferase(Phosphotransferase) domain 1 653 866 - -
Amo18g2988 873 Pfam Protein tyrosine and serine/threonine kinase 576 838 IPR001245 GO:0004672|GO:0006468
Amo18g2988 873 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 15 426 - -
Amo18g2988 873 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 519 862 - -
Amo18g2988 873 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 15 426 - -
Amo18g2988 873 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 519 862 - -
Amo18g2988 873 SUPERFAMILY L domain-like 38 344 - -
Amo18g2988 873 SUPERFAMILY Protein kinase-like (PK-like) 549 843 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g2988 Amo-Chr18 126446893 126451847 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g2988 472 867 Miscellaneous Gene Families AT3G03770 54.501 4.44e-137 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Amo18g2988 PK_Tyr_Ser-Thr 2.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g2988 - - adu:107462774 1537.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g2988 18 126446893 126451847 Amo18g2988 18 126446893 126451847 ECH