Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1948 ATGCAAGCATTACTTGCATGCTTTCCACATCCTCATGGAAACCCACTTCTCAAATTCAATTCACAATCACAAAGACTAAATTCTCTGCCCACTTTGTTTTCCACTTCCAAGTTCTTCCCACCCCAACCACAAATTTTTCTTTACCCTTCTAGTTTTGTTCTTAACACACCAAAATCACCCACAATTCGATCCCCAAAACATGGTCAAGTTCGTTGTGGCATTTCGTCGAACGGGAACAGTTCAAACGAGAAAAAAGGTGTTAAGGAGTGGTTTGAGGTATGTGGTGAGGCACTTTCAAATGCGTTTCCTTTGTGGGTGACTCTTGGGTGCGTGTTGGGGTTGGTGAGACCCAATTGCTTCAGTTGGGTCACTCCAAGATTGAACATTGTGGGACTCACCATAATTATGGTTGGTATGGGTATGACACTCACACTTGATGATCTTCGTGGTGCTCTTTCTATGAACAAAGAAGTACTGTCTGGTTTTGTGCTTCAATACTCGGTGATGCCATTATCGGGATTCTTTGTAAGCAAACTCTTAAACCTTCCATCACATTATGCAGCAGGTTTAATATTAGTTGCCTGCTGTCCTGGGGGCACGGCGAGTAACCTTGTTACTTATCTTGCACGCGGAAATGTTGCACTTTCGGTGATAATGACGGCTGCAAGCACTCTAACAGCTGTGGTCATGACTCCTTTATTGACAGCTAAACTTGCGGGCAAGTATGTAGCTGTGGATGGATCTGGTTTATTGATTTCAACATTGCAAGTTGTGCTGCTTCCTGTATTGGCCGGCGCATTGCTGAACCAATATTTCCAACCTCTTGTTAAATTAGTCTCTCGGCTGATGCCACCCATGGCAGTAGCAACTGTGGCAATCTTATGTGGAAATGCAATCGCGCAAAGTTCTTCAGCAATCCTTATGTCTGGTGGACAAGTAATTTTAGCATCCTCCCTTCTTCACGCTTCCGGATTTTTCTTCGGATATATACTTGCAAGAATGCTTGGGCTAGATGTGACAACATCGCGAACCATATCTATTGAGGTTGGCATGCAGAACTCTGTTCTTGGAATTGTTCTGGCTACTCAGCACTTTGGGGATCCCTTAACTGTGGTACCCTGCGCCATTTCGAGTGTGTGTCACAATATCTTTGGTAGCATTCTTGCCGGAATTTGGCGACACTCTGCGCCTGCCGAGAAAAAGGATTGA 1209 0.445 MQALLACFPHPHGNPLLKFNSQSQRLNSLPTLFSTSKFFPPQPQIFLYPSSFVLNTPKSPTIRSPKHGQVRCGISSNGNSSNEKKGVKEWFEVCGEALSNAFPLWVTLGCVLGLVRPNCFSWVTPRLNIVGLTIIMVGMGMTLTLDDLRGALSMNKEVLSGFVLQYSVMPLSGFFVSKLLNLPSHYAAGLILVACCPGGTASNLVTYLARGNVALSVIMTAASTLTAVVMTPLLTAKLAGKYVAVDGSGLLISTLQVVLLPVLAGALLNQYFQPLVKLVSRLMPPMAVATVAILCGNAIAQSSSAILMSGGQVILASSLLHASGFFFGYILARMLGLDVTTSRTISIEVGMQNSVLGIVLATQHFGDPLTVVPCAISSVCHNIFGSILAGIWRHSAPAEKKD* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1948 402 Gene3D - 87 395 IPR038770 -
Amo18g1948 402 Pfam Sodium Bile acid symporter family 130 303 IPR002657 GO:0016020
Amo18g1948 402 PANTHER SODIUM/METABOLITE COTRANSPORTER BASS1, CHLOROPLASTIC-RELATED 64 402 - -
Amo18g1948 402 PANTHER SODIUM-BILE ACID COTRANSPORTER 64 402 IPR004710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1948 Amo-Chr18 45954355 45957723 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1948 71 402 Organic Solute Cotransporters AT1G78560 75.000 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1948 K03453 - pvy:116128267 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1948 18 45954355 45957723 Amo18g1948 18 45954355 45957723 ECH