Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1696 ATGAAGAGCATTCTTTCTAATAAACCATGCTTCACTCTTCTTGTTCTTATTATTTTCGTTGTAGTAGCAATTCATCATGTTGAATGCCGCATTCTCCACACATACACTAGTCCTTATGATGAGTTATTAGTCTCTGATGGAGTTGATAATAATGTTGTTCAACCTCAAAACACTTACCTACCCCTTAATAATGAAAGACAAGACGTTTTTGTTGTTGATAAGTCTTCTTCTTCTTCTGGTGGAAAGTATTGCAAACAAATGTATGGGTTCTTGCCGTGTTCCAACAACATTTTTGGCCACTTGTTCCTGATATTGGTGTATGAGTACTTGTTGTTCCATGGTGAATCATACTTGGCTGCTGGTGGTGAACAAATCTTCAAGATTCTTGGACCTGGTGTCTTTGGTGCTAGTGCCTTTGACATTCTTGGTGCTCTTCCTGAGTCTTTAATTCTAGTTGTGACTGGACTTTCAAGTGATAAGGAGAGTGCACAAGAGTATGCTTCAACTGGAGTTGGTTTYTTGGCTGGTTCTTCTATCTTGCTTCTCACTGTTGTGTGGGGAACCTGTGTCATCATTGGCAAGCAAAAGTTGAAACTTGACTCTGATTCTGATGCTACAAACTCATCATGTGGAGGGATAAAAGAATCACTTACATGTTATGGAATTACCATGGATGTGGACACAAGAAAGATGGCAAGAAARATGGTTTTCTCAGTGACACCACTGATTATAATGCAGATTACCAATTTGTTCCCAAACTCTTCCACACTGCGCAATGTGACATTAATGATTGCTTTTATTGTAGCTCTCATTTTCCTCATCTCATACTTCATTTACCAGGTATTCAAACCTCAGATAGAGAAAACAAGACTAGAGTATATAAAACATGATGATTTGATATTAAGAATATTGCAACGTGTTGAAAAGCAAACTCTGCAAAAGATTCTGGCTGAGGATGGCACTCCTAATGTTAATGCCATAAGTGGGCTATATCAAGAAATTAGTCAACATGAGGGCAAGGATTTATCAGCATCAGAAGTAAAAGAGTTACTACTCAAGAACAAATTATCAGACACAAACATCAAAGAGGAACAGATAGCAGACATGTTGAAGATTTTTGACAAAAATGGTGACCAAATTATAACCAAGGAAGAATTTGTTAGTGGCTTGACAGAATACATTAACCAAACAAAACATGCTTTGGATAGACAATACCTCCCAAAAGAATCACTCAACAAAGTGTATCAGACATTTATCAAGCCATGGATTGAACATGTGAGGAAAGAAAGAGAATTGAAGGGACATCTTGTATCTCAAGTCTTGAAGCATGTCCAGAGTGAGGATGTGGTTGGCAGGCTCCTTAATGATGATGGCACAGCTGATAAAGCCGCCATTAGAAGGCTATTTGAGGAAGTTGATGTCAATGGAGATAACCATGTTTCAAGATCTGAGCTAGAAAGAATAGTGAAGGATATCCATTTTAGTAAGGCTGTCGATGCGGAGGAGGCACTCTCGAAACTTGTTCAAGATCTTGATGTCAATAGAGACAATGAAATCAGTGAGAAAGAATTTGTTGATGGTTTCACAAAATGGATAAACTCAAATTCCAGCCAAGCTGCTAATTCAAAATCTTCATCTCATGGAACTCATCAAACATGGGAAGATGTTGAGAAGGTGATGGAACAAAACCAAAGCAAAGGAGCATCTGCATGGTTGGAGGCTATAGGATATGTGGTGTTGGGAATTACCATGTTGTCCCTTCTTGCAGAGCCACTCATAGCAAGTGTCCAGAACTTCTCTGAAGAAGCAGGACTTTCTTCTTTTTCCATCTCATTTATCTTGGTACCTCTGGCCACAAATTTCAGAGAAGCAACTGCAGCAATCAAAGAAGCTAGTCACAAGAAGAGCAGCAACACTTCTCAAACAATATATGAGATATATGGAGCAGTGTTCATGAACAACATTCTTGGATTTGTGGTGATATCTATTCTGATATATGTGAGGGACATAACTTGGGAATTCTCAGCAGATGTTCTTGTTGTGGCCATTGTTTGTGCTGTCATGGGGATTGCTGCTAGTTTCCGCACCACTTTCCCTCTTTGGACATCAATCCCTGCATACCTCTTATACCTCATCTCATTGCTCTTTGTTTTTGTTCTCAAAGATATCTTCAACTATGTTTAG 2184 0.3878 MKSILSNKPCFTLLVLIIFVVVAIHHVECRILHTYTSPYDELLVSDGVDNNVVQPQNTYLPLNNERQDVFVVDKSSSSSGGKYCKQMYGFLPCSNNIFGHLFLILVYEYLLFHGESYLAAGGEQIFKILGPGVFGASAFDILGALPESLILVVTGLSSDKESAQEYASTGVGFLAGSSILLLTVVWGTCVIIGKQKLKLDSDSDATNSSCGGIKESLTCYGITMDVDTRKMARKMVFSVTPLIIMQITNLFPNSSTLRNVTLMIAFIVALIFLISYFIYQVFKPQIEKTRLEYIKHDDLILRILQRVEKQTLQKILAEDGTPNVNAISGLYQEISQHEGKDLSASEVKELLLKNKLSDTNIKEEQIADMLKIFDKNGDQIITKEEFVSGLTEYINQTKHALDRQYLPKESLNKVYQTFIKPWIEHVRKERELKGHLVSQVLKHVQSEDVVGRLLNDDGTADKAAIRRLFEEVDVNGDNHVSRSELERIVKDIHFSKAVDAEEALSKLVQDLDVNRDNEISEKEFVDGFTKWINSNSSQAANSKSSSHGTHQTWEDVEKVMEQNQSKGASAWLEAIGYVVLGITMLSLLAEPLIASVQNFSEEAGLSSFSISFILVPLATNFREATAAIKEASHKKSSNTSQTIYEIYGAVFMNNILGFVVISILIYVRDITWEFSADVLVVAIVCAVMGIAASFRTTFPLWTSIPAYLLYLISLLFVFVLKDIFNYV* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1696 727 Pfam EF-hand domain pair 464 526 IPR002048 GO:0005509
Amo18g1696 727 CDD EFh 465 529 IPR002048 GO:0005509
Amo18g1696 727 ProSitePatterns EF-hand calcium-binding domain. 374 386 IPR018247 -
Amo18g1696 727 SMART efh_1 464 492 IPR002048 GO:0005509
Amo18g1696 727 SMART efh_1 365 393 IPR002048 GO:0005509
Amo18g1696 727 SMART efh_1 503 531 IPR002048 GO:0005509
Amo18g1696 727 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 573 726 - -
Amo18g1696 727 ProSitePatterns EF-hand calcium-binding domain. 473 485 IPR018247 -
Amo18g1696 727 ProSiteProfiles EF-hand calcium-binding domain profile. 460 495 IPR002048 GO:0005509
Amo18g1696 727 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 15 406 - -
Amo18g1696 727 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 414 550 - -
Amo18g1696 727 Pfam Sodium/calcium exchanger protein 575 718 IPR004837 GO:0016021|GO:0055085
Amo18g1696 727 SUPERFAMILY EF-hand 340 532 IPR011992 -
Amo18g1696 727 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 573 726 - -
Amo18g1696 727 Gene3D - 321 399 - -
Amo18g1696 727 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 15 406 - -
Amo18g1696 727 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 414 550 - -
Amo18g1696 727 Gene3D - 400 543 - -
Amo18g1696 727 ProSiteProfiles EF-hand calcium-binding domain profile. 361 396 IPR002048 GO:0005509
Amo18g1696 727 ProSitePatterns EF-hand calcium-binding domain. 512 524 IPR018247 -
Amo18g1696 727 ProSiteProfiles EF-hand calcium-binding domain profile. 499 534 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1696 Amo-Chr18 34471102 34475923 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1696 414 726 EF-hand Containing Proteins AT1G53210 39.039 3.10e-60 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1696 - - ahf:112771843 1377.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1696 18 34471102 34475923 Amo18g1696 18 34471102 34475923 ECH