Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1679 ATGGATGGCAATGTTTTATTCGATGAAGGCAACAACGAAGAAGCCAACAACAATAATAATGGCACTATCAGCAACTCCAAGGACCGGAAGAGGAGAGACTACATGCTTGATGATGATAGCCCCAAGGTGGCACGCCAAAAACTTGCCAAGAGGATCCTCTTGTCTTTGACTAACCCTTCCTATGTTCTGAGACTTGGTTCCAAACCTCTGAGGTTGGATTACTGCACAAGGTTGCGGTACCTGCTGAGGAAGCTTGTCAAGGAACATGACTGGGCCACTGCCAGTGGTGTTCTCAGTGCTTACTTAAAGGGAACAATGAACGACAAGTCTCCATTCAGGAATTGCCTCAAGTTCTCGGCTTTATTGGAGCTTCTTAAGCACGTGGAAAACTATCATATTAATCCAACAAGGATGAAGAACCTCTTTGATATTTGGTCGAAGAATATTGGATCAATGAAGAGTTGGCCAATAGAAAGCAGATATAGAGTTCATGTGGAGTTCATCTTATTCTGTCTTGTGCATGGCAATACTGGGGATGCATATCAGCTTGTCATAAGCCTTGAGCAAGAAAAAGTTGATCTTGATCCTGTGTCAAAGATAATTATGGGCTTGACATTCTATACGATGTGGTATTCTTCTATCCCCGAAGAATTTCAGTGGAAAGATTCAGACCAGGCTGACTTGCAAGATTACTCACGTATGGAGGGGCCTTCCATCAGCAATGAAGTTGGACAGTCAGAGTGGCATAATACAGTTGAATCCTTTCTGGCAAACTCCCAAAGCCATTGTGAATCAGACACCTCTGTTTTGAAGGATAAGCATATATCTAGGGATGTTGGGTTCAACAATGACGTGGGAGAGTCTATGGAGATTGATGTTGATCATAGAAGAAAAGCATCGCATCAGAACTTACAGCCAGAAGAAGGTTTTCGCTCTAAGTCCGAAGAAAATGAAGGAAGTAGAGACTCCTTTTCCAACCATGAAGGCCTTACACAAGATACCTTAAATGTTATTAGGCAACTTGATTTGTGGTTGTTTCCCTTGAATTTTCCTGATGATAATAGTTTTGAGGAGTTCATGTATGTGCACTCAAATCAGCAAAATGACCAGTATAAAAAGGCTGTGAAATATTTACAACTTGCTCTCGACTCAGCACCTTCAGTAACAGCAGCATTACTTCCATTGATACAACTGTTGTTGATTGGAGGTCGTGTTGAAGAAGCCCTAATTTTGATTGAGAAGGAGTGTACTAATTCACCATCTGTGCTCCCTGTAAGATTGAGGGCTGCGTTCTTGGAGTGTTCTGATCGAAACAACTCTGACTTGATTGTCACATGTTTCGAGGATATGCTAAAGAAGGATCCACAAGAAAGTTATCCCTTAGCAAAACTTATCAGAATGTACCAAAACGGTGACTATAGCCTTGAATCTTTGTTCGAAATGATTGTTTTACATTTAGATGCTACTAGTGCAGAATACAGTACGTGGAGGATGTTATCTTCATGTTTCTTTAAACTCTCTTGGTACGAAGAAGATTCTATATCTGCAAACCATACTAATGAAGATGGAGATAGGCAACATTATTCCTTTAGAAAAACCCCAAAAGTGTTTACACAGGAAATGTCCGGAATGTCTTGGAGGTTTCGCTGTAGGAGCTGGCTACTAACACATTTCAGCCATAGACAGCTTAATTCAGATGTTGAAGGTGATTTGCAGCTACTCACATACAAAGCAGCATGCGCATCCTATATGTATGGGCAAGATTTCCACTATGTTTTAAAGGCTTATTTTGTATTAGAAAATGAAAATAATAAGGACTTATTGTTGATTTTGGGTGAGCACAGGCAAAATTCATTTGAATTTTATCAGCAATTTCAAAATAAACTGAAATTATAA 1896 0.4003 MDGNVLFDEGNNEEANNNNNGTISNSKDRKRRDYMLDDDSPKVARQKLAKRILLSLTNPSYVLRLGSKPLRLDYCTRLRYLLRKLVKEHDWATASGVLSAYLKGTMNDKSPFRNCLKFSALLELLKHVENYHINPTRMKNLFDIWSKNIGSMKSWPIESRYRVHVEFILFCLVHGNTGDAYQLVISLEQEKVDLDPVSKIIMGLTFYTMWYSSIPEEFQWKDSDQADLQDYSRMEGPSISNEVGQSEWHNTVESFLANSQSHCESDTSVLKDKHISRDVGFNNDVGESMEIDVDHRRKASHQNLQPEEGFRSKSEENEGSRDSFSNHEGLTQDTLNVIRQLDLWLFPLNFPDDNSFEEFMYVHSNQQNDQYKKAVKYLQLALDSAPSVTAALLPLIQLLLIGGRVEEALILIEKECTNSPSVLPVRLRAAFLECSDRNNSDLIVTCFEDMLKKDPQESYPLAKLIRMYQNGDYSLESLFEMIVLHLDATSAEYSTWRMLSSCFFKLSWYEEDSISANHTNEDGDRQHYSFRKTPKVFTQEMSGMSWRFRCRSWLLTHFSHRQLNSDVEGDLQLLTYKAACASYMYGQDFHYVLKAYFVLENENNKDLLLILGEHRQNSFEFYQQFQNKLKL* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1679 631 MobiDBLite consensus disorder prediction 295 328 - -
Amo18g1679 631 SUPERFAMILY TPR-like 366 469 IPR011990 GO:0005515
Amo18g1679 631 MobiDBLite consensus disorder prediction 295 323 - -
Amo18g1679 631 Coils Coil 631 631 - -
Amo18g1679 631 PANTHER TAF RNA POLYMERASE I SUBUNIT A 16 628 - -
Amo18g1679 631 MobiDBLite consensus disorder prediction 1 32 - -
Amo18g1679 631 Gene3D Tetratricopeptide repeat domain 354 511 IPR011990 GO:0005515
Amo18g1679 631 MobiDBLite consensus disorder prediction 10 24 - -
Amo18g1679 631 Pfam TAF RNA Polymerase I subunit A 84 596 IPR039495 GO:0000120|GO:0006360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1679 Amo-Chr18 33982773 33990902 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1679 - - gmx:100819662 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1679 18 33982773 33990902 Amo18g1679 18 33982773 33990902 ECH
Amo18g1679 18 33982773 33990902 Amo07g2394 07 70964742 70977383 hybridization