Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1610 ATGGATATGGCTACTGCACCTGCGACACACTGTTCCTTTGGAATTCGCATTCACTCTCATGCCGCTTCTTCTTCTTGTTTCCCTAACAGATTGGACTGTTCCTCGTCCTCCCACTTCCCTCTTCATCTAGAACTTTCTACGATTTCCATCTTCCCTCGTTCTTCTTCTCCTCTAAAGGGATCAATGGATCGAGTATGTGCACGGCCTGATATTGATGATTTCTACTGGGAGAAGGTTTCAACACCCATACTTGACACAATTGAAAATCCTATTTGCTTGAAAAACTTATCTCTTAAGGAACTGAAACAACTAGCTGGGGAGCTCCGTCTGGAGTTGTCTTCAATTATGTCGAGTACACAAATATCATTGAGTGCAAGCATAGCTGCAGTGGAGCTGACGATTGCAATGCACCATGTTTTTCATGCTCCAGTAGACAAGATATTATGGGATGTCGGCGAACAAACGTATGCACATAAGATTCTTACAGGAAGACGATCTCTCATGTACACAATGAGACAAAAGAATGGCATCTCTGGTTTTACTTCTCGATTTGAGAGTGAATATGATGCATTTGGTGCAGGTCATGGATGCAACAGTATTTCTGCTGGACTAGGCATGGCTGTTGCACGAGATATGAAGGGGAGGCGAGAACGCATAGTAACAGTAATCAGCAATTTGACAACAATGGCCGGTCAAGTGTACGAGGCAATGAGCAATGCAGGATATTTGGACTCAAATTTGGTGGTAGTTTTGAATGACAGCCGGCATTCCCTACTCCCTAAAGTTGATGAGGGCCCAAAGACATCCATCAATGCCCTCTCTAGTACCTTGAGCAAGCTCCAGTCCAGTAAATCTTTCCGAAGATTTAGAGAAGCTGCTAAGGGTGTCACAAAACGAATTGGTAGAGGTATGCATGAATGGGCAGCAAAAGTTGACGAATATGCCCGTGGGTTGATTGGCCCATTAGGTTCTACTCTCTTTGACGAGCTTGGTCTGTACTACATAGGCCCAGTGGATGGTAATAATATTGAAGATCTAGTTTGTGTTCTGCAAGAAGTTGCTTCGCTCGATTCAATGGGTCCTGTCTTGGTTCATGTTATAACTGATGATAATCAGGGAGTAGAAAACAATAAAAGAAGTGATATYACCGACGGGCAGGAAGATGATTCTATAAAATCAAATTTTTTACATTATGATGTTCAGCAACGGACATATGGGGATTGCTTTGTGGAGACTTTGGTTTCAGAAGCCGAGAAAGACAAAGATATTGTAGTTGTTAATGCAGGAACCATGATGGAGCCATCACTAGAGCTGTTTCGGGACAAATTTCCCGATAGGTTTTTTGATGTGGGAATGGCCGAGCAACATGCAGTCACCTTTGCTTCTGGTTTGTCATGTGGTGGATTGAAGCCTTTCTGTGTTATACCTTCTTCCTTTCTACAAAGGGCATATGACCAGGTTGTCCATGATGTAGATCAACAGAAAATTCCGGTACGCTTTGTCATCACAAGTGCAGGATTGGTGGGCTCTGATGGTCCTCTCCAATGTGGGGCATTTGACATAACCTTTATGTCATGCTTACCGAACATGATTGTTATGGCACCGTCTGATGAAATCGAACTCGTGCACATGGTGGCTACTGCTATTCATGTCAATGATCGGCCGATTTGCTTTCGGTATCCCAGGGGTGCTCTTGTTGGGAGAGACCAAACTATATGTGATGGAGTCCCCATTGAGATTGGAGAAGGAAGAGTTCTTGTTGAAGGTAAAGATGTTGCTTTACTGGGATATGGATCAATGGTTCAGAACTGCCTTAAGGCTCATACACTTCTTGCAAAGCTTGGCATTGAGGTCACTGTTGCTGATGCAAGGTTTTGCAAGCCCCTTGACATCAAGCTTCTGAGGCAGCTCTGCAAGCATCATTCATTCCTGATTAGTGTCGAGGAAGGATCTATTGGAGGATTCGGTTCTCATGTTGCACAGTTCATTGCACTTGATGGACTGCTTGATGGAAGTATTAAGTGGCGACCAATAGTCTTACCTGATAGTTACATTGAGCATGCATCACCAAACGAGCAGCTTCAGCAGGCGGGGTTAACCGGACATCACATTGCCGCCACAACATTGAGTTTGCTTGGCCGTACCCGCGAAGCTCTCCAATTCATGTGTTCTTGA 2175 0.4423 MDMATAPATHCSFGIRIHSHAASSSCFPNRLDCSSSSHFPLHLELSTISIFPRSSSPLKGSMDRVCARPDIDDFYWEKVSTPILDTIENPICLKNLSLKELKQLAGELRLELSSIMSSTQISLSASIAAVELTIAMHHVFHAPVDKILWDVGEQTYAHKILTGRRSLMYTMRQKNGISGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDMKGRRERIVTVISNLTTMAGQVYEAMSNAGYLDSNLVVVLNDSRHSLLPKVDEGPKTSINALSSTLSKLQSSKSFRRFREAAKGVTKRIGRGMHEWAAKVDEYARGLIGPLGSTLFDELGLYYIGPVDGNNIEDLVCVLQEVASLDSMGPVLVHVITDDNQGVENNKRSDITDGQEDDSIKSNFLHYDVQQRTYGDCFVETLVSEAEKDKDIVVVNAGTMMEPSLELFRDKFPDRFFDVGMAEQHAVTFASGLSCGGLKPFCVIPSSFLQRAYDQVVHDVDQQKIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEIELVHMVATAIHVNDRPICFRYPRGALVGRDQTICDGVPIEIGEGRVLVEGKDVALLGYGSMVQNCLKAHTLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLISVEEGSIGGFGSHVAQFIALDGLLDGSIKWRPIVLPDSYIEHASPNEQLQQAGLTGHHIAATTLSLLGRTREALQFMCS* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1610 724 CDD TPP_PYR_DXS_TK_like 409 562 - -
Amo18g1610 724 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 81 464 IPR029061 -
Amo18g1610 724 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 402 591 IPR029061 -
Amo18g1610 724 CDD TPP_DXS 123 373 IPR005477 GO:0008661|GO:0016114
Amo18g1610 724 SMART Transket_pyr_3 403 568 IPR005475 -
Amo18g1610 724 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 86 710 IPR005477 GO:0008661|GO:0016114
Amo18g1610 724 Pfam Transketolase, pyrimidine binding domain 404 565 IPR005475 -
Amo18g1610 724 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 4 723 IPR005477 GO:0008661|GO:0016114
Amo18g1610 724 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 84 368 IPR005477 GO:0008661|GO:0016114
Amo18g1610 724 Gene3D - 403 574 - -
Amo18g1610 724 SUPERFAMILY TK C-terminal domain-like 576 712 IPR009014 GO:0003824
Amo18g1610 724 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 83 713 IPR005477 GO:0008661|GO:0016114
Amo18g1610 724 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 4 723 - -
Amo18g1610 724 Pfam Transketolase, C-terminal domain 581 704 IPR033248 -
Amo18g1610 724 Gene3D - 581 712 IPR009014 GO:0003824
Amo18g1610 724 Gene3D - 76 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1610 Amo-Chr18 31566951 31573326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1610 445 663 Acyl Lipid Metabolism Gene Families AT1G55510 25.210 1.55e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1610 K01662 - gmx:100787937 1160.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1610 18 31566951 31573326 Amo18g1610 18 31566951 31573326 ECH