Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1568 ATGGAGATGGACCCTGACGTTGTTGAAATTCTTCCCCCAATTCACCGAACTTCCAGATTGGTTAAGCAAAATCAGGCCATTCCACAGGATGTGATTGAAATTGACAACGACGATGATTGCGAGGATTTAATGATAATTGGTGAAAAAGTTGGTAAAAGTAACAAGGGGAAGACAATTGAATCTATTCACAATGGCTATGGCAATCAAGTTGTGGAAAGTGGGTTTGAGACTTCTACTGGTCATTCTTCGGTACCACATAACCTAACTAGTGTTGATGCTCATGTTGCGGATCTATCATATGATGATGATGAGGATGCTGATGATGACTACATTGATTTTATTTCTGAAGAGTATGCACAAGTCGATGAGTATGCTTTATTACAGGCACACTTTGATAATGTGGATATACCTCCTGGAATTGAGGCACCGTTTACTTGGTTGCCAGAATATGAACAAGGTTTGAAGCAAACTGGGAATAGTTCTTTGCATCCTTGGTATCCTACACAATCAGATGCTGAAATTCCTCAGGTGATAGAGTCAGCTAAATCTAAAATCATAGGATCTTCAACAGGTGCTTCTAATTTTCAAATGAACATGGGTGATGTTGATCACTCCTCTGGAATAAATTTGGCTTCTCAATCTGCTCATAGTAAGAAGAAAGTAGCTAATTCACAACGCAGGGTTCGTGGTTCACACACATTATCAGGACCCCACTCATCTAAGTCTCAATGGTTTTCAGGACCTTTCCATGTTAAAAAGACACCTGCTATTGGTTTCGTCGGCAATTCAGAGGCTGTGAAACCACCACCGGCAGGTGCACCACCATTTTGGAGGAAATTTAAAACTGCTAAGAAGCTAGGTGGCAGTAGCAGTTTGTACCATCCAAGTTTCATTGGACAGAATGGATCATTTCATCCACCAGGAATGGAATCAAAAGGCCCATGGTCAACAAATTTTCAGAATTTTATGCCAACTTTTTCTGATTACAATGCTAATTCAACTAGCTATGGTCCACTTGATTTTCTTCATCCTCCTCCTGGGCATATGCAGTTTAACACATCGGTTCACAATTCTGCCGGAGAAGGAAATAGTGGAGATAGCCCAGTTGTGGCCATCTCTGATGAAGATCGGGATGAAATCATGATGAAATTTCGAAGTTTTAAACAATTTGACACTGTTGAAGATCCATCAGATCATCGCTTTGTTGGCTATAACTCTTCCTTGAAGCAGCATCCAAAGAATTGGGCTAAAAAAATCCAGGACGAGTGGAAGATTTTGGAGAAGGATTTGCCAGATACAATATTTGTCCGAGTTTATGAATCAAGGATGGATCTTTTGAGGGCCGTTATTATTGGAGCAGTGGGGACTCCTTATCATGATGGTCTTTTCTTCTTTGATGTTTTCTTCCCCAGTGGCTATCCCAATGTACCGCCGCAAGTTTACTACCACTCTGGAGGTCTTCGACTCAACCCGAACTTGTATAATTGTGGCAAAGTATGCCTTAGCCTGCTTAATACCTGGTCTGGCAACAAGAACGAGAAGTGGCTTCCAGGTGTTTCAACAATTCTGCAGGTTCTGGTCTCTATACAAGGTCTGATTCTCAATACGAAGCCTTACTTTAACGAACCTGGATATGCACACATGAGTGGTTCCGCAAATGGTGAAACAAAGTCCCTGCAGTATAATGAGGACACATTCATCCTTTCATTAAGAACAATGATGTATATGATGAAAAGGCCCCCAAAGCATTTTGAGAACTTTGTTACGGGGCATTTCTATAGCCGAGCTCATGATATTCTAGTGGCATGCAAAGCGTACATGGAGGGTGCGCAAGTTGGATGTTTGGTCAAGGGTGGGGTTCAGGATGTCGACGAAGGCGACAAAAGCTGCTCGAAGCAGTTCAAGGAATCTCTAACTGGATATGTGAGTATGATTGTCAAAGAGTTTGCAAAAATTGGAGTTAAGGACTGTGAGAAGTTCCTCTCCACCAAAAAAATAGTGAACAAGCCTTTGTCTTTGCCTGCAGCCTGA 2031 0.4175 MEMDPDVVEILPPIHRTSRLVKQNQAIPQDVIEIDNDDDCEDLMIIGEKVGKSNKGKTIESIHNGYGNQVVESGFETSTGHSSVPHNLTSVDAHVADLSYDDDEDADDDYIDFISEEYAQVDEYALLQAHFDNVDIPPGIEAPFTWLPEYEQGLKQTGNSSLHPWYPTQSDAEIPQVIESAKSKIIGSSTGASNFQMNMGDVDHSSGINLASQSAHSKKKVANSQRRVRGSHTLSGPHSSKSQWFSGPFHVKKTPAIGFVGNSEAVKPPPAGAPPFWRKFKTAKKLGGSSSLYHPSFIGQNGSFHPPGMESKGPWSTNFQNFMPTFSDYNANSTSYGPLDFLHPPPGHMQFNTSVHNSAGEGNSGDSPVVAISDEDRDEIMMKFRSFKQFDTVEDPSDHRFVGYNSSLKQHPKNWAKKIQDEWKILEKDLPDTIFVRVYESRMDLLRAVIIGAVGTPYHDGLFFFDVFFPSGYPNVPPQVYYHSGGLRLNPNLYNCGKVCLSLLNTWSGNKNEKWLPGVSTILQVLVSIQGLILNTKPYFNEPGYAHMSGSANGETKSLQYNEDTFILSLRTMMYMMKRPPKHFENFVTGHFYSRAHDILVACKAYMEGAQVGCLVKGGVQDVDEGDKSCSKQFKESLTGYVSMIVKEFAKIGVKDCEKFLSTKKIVNKPLSLPAA* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1568 676 Pfam Ubiquitin-conjugating enzyme 419 543 IPR000608 -
Amo18g1568 676 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 414 574 IPR000608 -
Amo18g1568 676 SMART ubc_7 417 574 - -
Amo18g1568 676 SUPERFAMILY UBC-like 402 583 IPR016135 -
Amo18g1568 676 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 18 665 - -
Amo18g1568 676 CDD UBCc 417 543 IPR000608 -
Amo18g1568 676 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 18 665 - -
Amo18g1568 676 MobiDBLite consensus disorder prediction 227 247 - -
Amo18g1568 676 Gene3D Ubiquitin Conjugating Enzyme 373 655 IPR016135 -
Amo18g1568 676 MobiDBLite consensus disorder prediction 211 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1568 Amo-Chr18 30757872 30762351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1568 387 657 Miscellaneous Gene Families AT2G33770 52.747 1.16e-86 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1568 K10581 - gmx:100809853 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1568 18 30757872 30762351 Amo18g1568 18 30757872 30762351 ECH