Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1548 ATGGCTACCGTACAACTCCAGTCCCTCACCCTCTCTCGCTCCTCCGCCCTCTCCGCTCCGACCACCGTGTCCTCCATATCCGGTCGCCGGGAATCCATCAAGCTGCCGCGCCACGCCGGACTTAGACTCGCCACCTCGACTCGCTTTTCCGGCTCACCGAGTCGCGCCGTGTCGAGAATCGCCGCCTCACGTGCTGGTGGACGCGTCGTGTGCGAGACTCAGGACACCGCCGCCGTCCAAGTGGATCCCATTACTGACGCAAATTGGCAATCGCTTGTGCTCGAATCCGATACTCCTGTTTTGGTCGAATTCTGGGCACCATGGTGCGGTCCCTGCCGTATGATCCACCCAATAATCGATGAGCTAGCCAAGGAATATGCCGGGAAGCTTAAGTGTTACAAGCTCAACACTGATGAGAGCCCTTCCACGGCTACCCGGTATGGAATCCGTAGCATCCCAACCGTCATCATCTTCAAGAATGGTGAGAAGAAAGATGCAGTAATTGGTGCTGTGCCGAAGACAACATTGATGACAAGCATAGAGAAATTCTTGTAA 555 0.5568 MATVQLQSLTLSRSSALSAPTTVSSISGRRESIKLPRHAGLRLATSTRFSGSPSRAVSRIAASRAGGRVVCETQDTAAVQVDPITDANWQSLVLESDTPVLVEFWAPWCGPCRMIHPIIDELAKEYAGKLKCYKLNTDESPSTATRYGIRSIPTVIIFKNGEKKDAVIGAVPKTTLMTSIEKFL* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1548 184 CDD TRX_family 87 181 - -
Amo18g1548 184 Pfam Thioredoxin 82 181 IPR013766 -
Amo18g1548 184 ProSitePatterns Thioredoxin family active site. 101 119 IPR017937 -
Amo18g1548 184 PRINTS Thioredoxin family signature 100 108 - -
Amo18g1548 184 PRINTS Thioredoxin family signature 108 117 - -
Amo18g1548 184 PRINTS Thioredoxin family signature 148 159 - -
Amo18g1548 184 ProSiteProfiles Thioredoxin domain profile. 51 184 IPR013766 -
Amo18g1548 184 TIGRFAM thioredoxin: thioredoxin 85 183 IPR005746 GO:0015035
Amo18g1548 184 PANTHER GEO12009P1 1 184 - -
Amo18g1548 184 Gene3D Glutaredoxin 81 184 - -
Amo18g1548 184 PANTHER THIOREDOXIN M-TYPE PROTEIN 1 184 - -
Amo18g1548 184 SUPERFAMILY Thioredoxin-like 80 184 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1548 Amo-Chr18 30282002 30284359 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1548 K03671 - gmx:100811845 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1548 18 30282002 30284359 Amo18g1548 18 30282002 30284359 ECH