Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1537 ATGGCGAAGAAGAAGGAGAAGAAAGTGAACGTGTCTGGGAAGCCGAAACACTCCCTGGACGTGAACCGCAACAATGGCGCCGCCACCAAGGAAAACACCCGCTCCGCCTCCACCGTCCGCCGCCTCAAGATGTACAACACGAGGCCCGTCCGAGACCGCAAGGGCAAGATCCTCAGCCACGATCTCCAGTCCAAGGACCTGCCTGCTACTCGCATCCAGCCTGACCGCCGCTGGTTCGGGAACACTCGCGTGGTGAATCAGAAAGAGCTTGAGGTCTTCAGGGAAGAGCTGCAAAGCCGAATGTCAAGTAACTACAATGTTATTCTGAGGGAGAAGAAGCTTCCCTTGTCGCTCCTCAGCGATCACCAGAAGCAAGCAAAGGTTCACCTTCTTGATAGAGAGCCTTTCGCGAATGCATTTGGGCCAAAGACTACGAGAAAGCGCCCAACCCTCTTGGCTGCTGATTACGAGTCCTTGGTTAAGAAAGCTGATGGTTCTCAAGAGGCTTTTGAACAGAAGTTTGGTGCTAGTGGATCTTCAGATGCTAATGAAGAAGATGGATTTAGGGACTTAGTGCGGCATAATATGTTTGAAAAAGGTCAAAGTAAACGTATTTGGGGTGAACTCTACAAGGTCATTGATTCTTCTGATGTTGTTGTCCAGGTTCTAGATGCTAGGGATCCACAAGGCACAAGATGTTACCATTTAGAGAGGCATTTGAAGGAACATTGCAAGCACAAACATATGGTTCTTTTATTGAACAAGTGTGATCTACTTCCTGCTTGGGCTACAAAAGGATGGCTTAGAGTTTTGTCAAAAGAATATCCAACTCTAGCATTTCATGCAAGCATTAATAAGTCCTTTGGAAAGGGTTCACTTCTATCAGTTCTAAGACAATTCTCTCGATTGAAAAGTGACAAGCAAGCTATATCTGTTGGATTTGTTGGATATCCAAATGTTGGAAAATCTTCAGTGATCAATACATTGCGTACAAAAAATGTCTGCAAGGTTGCTCCAATTCCAGGGGAAACAAAAGTCTGGCAGTATATAACACTTACAAAGAGGATCTTTTTGATTGATTGTCCAGGAGTTGTTTACCAAAACAAGGACTCTGAAACAGATGTTGTCCTTAAGGGCGTGGTACGTGTTACAAACTTGCAAGATGCTGCAGACCATATAGGTGAGGTCTTGAAACGTGTGAAGAAGGAGCACCTGAAAAGAGCGTATAGAATAAATGAGTGGGTGGATGAAAATGACTTCCTACTTCAGCTTTGTAAATCAACGGGAAAACTTCTTAAGGGTGGGGAGCCTGACCTGATGACCGCAGCAAAGATGATTCTTCATGATTGGCAGAGGGGCAAGATACCATTTTTTGTTCCTCCTCCACAACTAGATGACTTACCTGAGGAAACCAATGTCAATGGTGTAGACATAGATGAAGCAGTTGATTCCAACCAGGCATCTGCAGCTATGAAAGCTATTGCAAATGTTCTATCATCCCAACAACAAAGAAATGTGCCTGTTCAAAAGGACTTATATGACGAGACTGAGTTGCAAGGAGAAACAGCCGACCAACTTCAAAATATGGAGGATGATTCAGACGAAGAGAACTCAACGTCTGACAGTGACACATCTGAGCAGGATCCAGCTACTGATGCCCCACCTGAGAAGCTTCCTTCTGCATAG 1686 0.4514 MAKKKEKKVNVSGKPKHSLDVNRNNGAATKENTRSASTVRRLKMYNTRPVRDRKGKILSHDLQSKDLPATRIQPDRRWFGNTRVVNQKELEVFREELQSRMSSNYNVILREKKLPLSLLSDHQKQAKVHLLDREPFANAFGPKTTRKRPTLLAADYESLVKKADGSQEAFEQKFGASGSSDANEEDGFRDLVRHNMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCYHLERHLKEHCKHKHMVLLLNKCDLLPAWATKGWLRVLSKEYPTLAFHASINKSFGKGSLLSVLRQFSRLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKDSETDVVLKGVVRVTNLQDAADHIGEVLKRVKKEHLKRAYRINEWVDENDFLLQLCKSTGKLLKGGEPDLMTAAKMILHDWQRGKIPFFVPPPQLDDLPEETNVNGVDIDEAVDSNQASAAMKAIANVLSSQQQRNVPVQKDLYDETELQGETADQLQNMEDDSDEENSTSDSDTSEQDPATDAPPEKLPSA* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1537 561 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 206 367 IPR030378 GO:0005525
Amo18g1537 561 MobiDBLite consensus disorder prediction 1 37 - -
Amo18g1537 561 CDD NGP_1 208 364 - -
Amo18g1537 561 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 2 2 548 IPR024929 GO:0005730
Amo18g1537 561 Pfam 50S ribosome-binding GTPase 312 400 IPR006073 GO:0005525
Amo18g1537 561 MobiDBLite consensus disorder prediction 527 542 - -
Amo18g1537 561 PANTHER GTP-BINDING PROTEIN-RELATED 2 548 - -
Amo18g1537 561 PRINTS GTP1/OBG GTP-binding protein family signature 312 332 IPR006073 GO:0005525
Amo18g1537 561 PRINTS GTP1/OBG GTP-binding protein family signature 358 373 IPR006073 GO:0005525
Amo18g1537 561 MobiDBLite consensus disorder prediction 511 561 - -
Amo18g1537 561 MobiDBLite consensus disorder prediction 17 37 - -
Amo18g1537 561 Pfam NGP1NT (NUC091) domain 44 168 IPR012971 -
Amo18g1537 561 Gene3D - 367 459 IPR023179 -
Amo18g1537 561 Gene3D - 196 366 IPR027417 -
Amo18g1537 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 435 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1537 Amo-Chr18 30110441 30114668 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1537 K14537 - gmx:100788649 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1537 18 30110441 30114668 Amo18g1537 18 30110441 30114668 ECH
Amo18g1537 18 30110441 30114668 Amo08g1563 08 25716714 25720907 hybridization