Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1528 ATGGATCGGGTTCTGAGGGCGGCGCGTGCCTCCGGTTCCCTCAACCTCTCAAATCGCAACCTCCGACACGTTCCCGATGAGGTGTATCGCAATCTCGACGGCCTCGGCGGCGACGACAAGTGGTGGGAGGCTGTGGAGCTTCAGAAGCTGATTTTGGCTCACAATAGCATTGAGTCTTTGAAGGATGATATTCGCAACTTGCCTTGCCTTGCTGTCTTGAATCTTAGCCACAACAGGCTTTCTGAGCTCCCGGCTGCTATCGGAGAGCTGCCTCAGTTGAAGTTGTTGGATGTTTCATTCAATTTGATATCTAAAATACCAGAGGAAATTGGCTCAGCAACATCACTTGTTAAGCTTGATTGTTCAAACAATCAGCTCAAGGAACTTCCAAGCTCACTTGGCAGATGCTTAGAATTGTCCGACCTAAAGGGATCAAACAATCTTATTGCAAGCTTGCCAGAAGATTTAGCAAATTGTTCCAAATTGTCCAAGCTAGATATGGAGGGAAACAAGTTAACAGAGATATCTGAAAATCTCTTTTCATCATGGACCATGCTTACTGAATTCAATGCATCAAAAAACTTGTTGAATGGCATACCAGACAGCATTGGAGGCCTTTCACGTCTAATTCGTCTTGATCTCCACCAGAACAGAATCTCATCAATCCCTTCATCAATCATGGGTTGTCATTCACTTGCCGAGATTTATTTGGGGAATAACAACCTTTCTACAGTACCTATGGAGATTGGAGCACTTTCTCATCTAGGGACTTTAGATCTTCACTCTAATCAGCTGAAGGAGTATCCAGTAGAGGCATGCAAATTGAATCTTCTTGTGTTAAATCTTTCAAACAATTCACTGAGTGGGTTACCCGCTGAAATTGGTAAGATGACCACCTTGAGGAAACTTTTGCTTACTGGAAATCCTTTGCGGACTCTCCGAAGCTCATTAGTCAATGGACCTACACAAGCATTACTCAAATATCTCCGAAGTAGACTTTCTGAAGCTGAAGATTCTGGAGCAGTAATCACAGAAAAAGATGAAGTAATTGCAATGGCTACCCGGCTGTCTGTCACTTCAAAGGAATTTTCAATGGAAGGACTGGGGTTGAATTCAGTTCCACCAGAAGTATGGGAATCAGGGGAAGTCATGAAACTTGACCTTTCCAAAAACTCCATCCAGGAGTTGCCTGTTGAGCTTTCTTCTTGTGTATCCCTCCAGACATTGATTTTATCTAAGAATCAAATTAAAGACTGGCCAGGTTCAATTCTTAAGTCACTTTCTAGTTTGTCATGTCTGAAGCTGGACAACAATCCTCTGAGGCAGATACCATCAGATGGTTTTGAAGCGGTGCCTATGCTTCAGATCCTGGATCTCAGTGGTAATGCAGCTTCATTAGTTGATGGACCTTCATTTTCTTGTTTGACACACCTTAAAGAGCTTTACATGAGGAGAATGCAGCTCGGTGAGTTCCCATCAGATATACTGAAGTTGCATCAACTACAGATCCTTGATTTGAAACAGAATTCCCTTCAGTCAATTCCTGTGGGGATAAAAGATCTCACTTCTCTCAAGGAGCTTGATTTATCTGATAACAACATCTCAGCCCTTCCACCTGAGTTGGGTTTGCTGGAGCCAAGCCTTCAAGCATTGAGACTTGATGGGAATCCACTCAGAAGCATTCGGAGGACTGTCTTGGATAAAGGAACTAAAGCTGTTCTGAATTATTTGAAGGACAAACTACCGGAGCAATAA 1755 0.4325 MDRVLRAARASGSLNLSNRNLRHVPDEVYRNLDGLGGDDKWWEAVELQKLILAHNSIESLKDDIRNLPCLAVLNLSHNRLSELPAAIGELPQLKLLDVSFNLISKIPEEIGSATSLVKLDCSNNQLKELPSSLGRCLELSDLKGSNNLIASLPEDLANCSKLSKLDMEGNKLTEISENLFSSWTMLTEFNASKNLLNGIPDSIGGLSRLIRLDLHQNRISSIPSSIMGCHSLAEIYLGNNNLSTVPMEIGALSHLGTLDLHSNQLKEYPVEACKLNLLVLNLSNNSLSGLPAEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTQALLKYLRSRLSEAEDSGAVITEKDEVIAMATRLSVTSKEFSMEGLGLNSVPPEVWESGEVMKLDLSKNSIQELPVELSSCVSLQTLILSKNQIKDWPGSILKSLSSLSCLKLDNNPLRQIPSDGFEAVPMLQILDLSGNAASLVDGPSFSCLTHLKELYMRRMQLGEFPSDILKLHQLQILDLKQNSLQSIPVGIKDLTSLKELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTVLDKGTKAVLNYLKDKLPEQ* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1528 584 ProSiteProfiles Leucine-rich repeat profile. 208 229 IPR001611 GO:0005515
Amo18g1528 584 ProSiteProfiles Leucine-rich repeat profile. 92 113 IPR001611 GO:0005515
Amo18g1528 584 ProSiteProfiles Leucine-rich repeat profile. 276 297 IPR001611 GO:0005515
Amo18g1528 584 SMART LRR_bac_2 67 86 - -
Amo18g1528 584 SMART LRR_bac_2 498 517 - -
Amo18g1528 584 SMART LRR_bac_2 274 293 - -
Amo18g1528 584 SMART LRR_bac_2 229 248 - -
Amo18g1528 584 SMART LRR_bac_2 521 541 - -
Amo18g1528 584 SMART LRR_bac_2 90 109 - -
Amo18g1528 584 SMART LRR_bac_2 159 178 - -
Amo18g1528 584 SMART LRR_bac_2 206 225 - -
Amo18g1528 584 SMART LRR_bac_2 113 132 - -
Amo18g1528 584 ProSiteProfiles Leucine-rich repeat profile. 46 68 IPR001611 GO:0005515
Amo18g1528 584 Gene3D Ribonuclease Inhibitor 128 225 IPR032675 -
Amo18g1528 584 PANTHER LRR RECEPTOR-LIKE KINASE 14 131 - -
Amo18g1528 584 PANTHER LRR RECEPTOR-LIKE KINASE 136 226 - -
Amo18g1528 584 PANTHER LRR RECEPTOR-LIKE KINASE 207 584 - -
Amo18g1528 584 Gene3D Ribonuclease Inhibitor 5 127 IPR032675 -
Amo18g1528 584 Gene3D Ribonuclease Inhibitor 334 468 IPR032675 -
Amo18g1528 584 Gene3D Ribonuclease Inhibitor 469 580 IPR032675 -
Amo18g1528 584 Gene3D Ribonuclease Inhibitor 226 332 IPR032675 -
Amo18g1528 584 SUPERFAMILY L domain-like 362 561 - -
Amo18g1528 584 Pfam Leucine rich repeat 500 558 IPR001611 GO:0005515
Amo18g1528 584 Pfam Leucine rich repeat 429 485 IPR001611 GO:0005515
Amo18g1528 584 Pfam Leucine rich repeat 254 310 IPR001611 GO:0005515
Amo18g1528 584 Pfam Leucine rich repeat 46 103 IPR001611 GO:0005515
Amo18g1528 584 Pfam Leucine rich repeat 190 242 IPR001611 GO:0005515
Amo18g1528 584 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 14 131 - -
Amo18g1528 584 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 136 226 - -
Amo18g1528 584 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 207 584 - -
Amo18g1528 584 ProSiteProfiles Leucine-rich repeat profile. 405 426 IPR001611 GO:0005515
Amo18g1528 584 SUPERFAMILY L domain-like 39 319 - -
Amo18g1528 584 PRINTS Leucine-rich repeat signature 277 290 - -
Amo18g1528 584 PRINTS Leucine-rich repeat signature 521 534 - -
Amo18g1528 584 ProSiteProfiles Leucine-rich repeat profile. 523 544 IPR001611 GO:0005515
Amo18g1528 584 SMART LRR_typ_2 546 568 IPR003591 -
Amo18g1528 584 SMART LRR_typ_2 45 66 IPR003591 -
Amo18g1528 584 SMART LRR_typ_2 404 426 IPR003591 -
Amo18g1528 584 SMART LRR_typ_2 521 544 IPR003591 -
Amo18g1528 584 SMART LRR_typ_2 427 450 IPR003591 -
Amo18g1528 584 SMART LRR_typ_2 297 320 IPR003591 -
Amo18g1528 584 SMART LRR_typ_2 252 275 IPR003591 -
Amo18g1528 584 SMART LRR_typ_2 381 403 IPR003591 -
Amo18g1528 584 SMART LRR_typ_2 114 136 IPR003591 -
Amo18g1528 584 SMART LRR_typ_2 498 520 IPR003591 -
Amo18g1528 584 SMART LRR_typ_2 276 296 IPR003591 -
Amo18g1528 584 SMART LRR_typ_2 90 113 IPR003591 -
Amo18g1528 584 SMART LRR_typ_2 67 88 IPR003591 -
Amo18g1528 584 SMART LRR_typ_2 206 229 IPR003591 -
Amo18g1528 584 SMART LRR_typ_2 159 182 IPR003591 -
Amo18g1528 584 ProSiteProfiles Leucine-rich repeat profile. 69 90 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1528 Amo-Chr18 29887601 29894855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1528 94 540 Receptor kinase-like Gene Family AT1G08590 28.070 3.56e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1528 - - gmx:100781571 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1528 18 29887601 29894855 Amo18g1528 18 29887601 29894855 ECH
Amo18g1528 18 29887601 29894855 Amo08g1561 08 25679394 25686219 hybridization