Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo18g1516 | ATGCAAATTACAACTGGAAAGTATCACACCCTGTTGATCAGCAATTCCTCTGTCTACTCTTGTGGTTCTGGATTATCTGGTGTACTTGGTCAAGGGCCTGAAACACAATGCGTAGCATTTACCCGGATAAGTTTCCCACCTTTGGCACGTGTAGTTCATGTATCAGCCTCCTTTAATCATGCAGCTTTTGTTATGCAATCTGGAGAGGTATTCACATGTGGAGATAATTCATCTTCTTGCTGTGGCCATAGCGATACAAGCCGACCGATTTCCAGGCCACGTCTTGTTGAATCCCTGAAGGGAGTCCCTTGCAAGCAGGTTGCAGCAGGGCTTAACTTCACAGTCTTCCTCACTAGACAAGGTCATGTTTATACATGTGGAACCAATTCGCATGGCCAACTTGGCCATGGTGACTCTCAGGACAGACCAACTCCAAAAATGATTGAAGTCCTTGGTAATGCAGATCCTGTTGTTCAGATTGCTGCTGGACCAAGCTATATCTTAGCTGTAACAGCGAACGGAGCTGTATACTCCTTTGGGTCGGGGGCTAACTTCTGCCTTGGTCATGGGGAGCAACATAATGAGTTTCTGCCACGTGCTATACAGAAGTTTAGAAGAAAAGGTATTCATGTTGTCCGTGTATCTGCCGGGGATGAGCATGCAGTGGCACTTGATTCAAATGGATTCGTATATACGTGGGGCAAGGGATACTGTGGTGCTCTTGGCCTTGGGGACGAGATTGAGAAAACTACCCCCGAGATTGTGACCGGTCTTAAGAATCACTTGGCTGTTCAGGTCTGTGCAAGAAAGAGGAAAACTTTTGTGCTAATTGATTCTGGTTCAGTCTATGGCTTTGGTTCGATGGGATTCGGCAGCCTGGGATTTCTCGACAGAGGGGTATATGATAAAATCTTGAAGCCAAGAATCTTGGATACCTTAAAAACTCACCGTGTTTCACAAATTAGCACTGGATTGTATCATACAGTGGCAATCACAAGCAGTGGAAGGATATTTGGATTTGGAGACAATGAAAGAGCACAACTTGGTCATGACACATTAAGAGGGTGCCTTGAACCAACTGAGATTTTCGTCAAAGAAGATTCTTCACAAGAAAATATAGATCCCGACATTTGA | 1134 | 0.4489 | MQITTGKYHTLLISNSSVYSCGSGLSGVLGQGPETQCVAFTRISFPPLARVVHVSASFNHAAFVMQSGEVFTCGDNSSSCCGHSDTSRPISRPRLVESLKGVPCKQVAAGLNFTVFLTRQGHVYTCGTNSHGQLGHGDSQDRPTPKMIEVLGNADPVVQIAAGPSYILAVTANGAVYSFGSGANFCLGHGEQHNEFLPRAIQKFRRKGIHVVRVSAGDEHAVALDSNGFVYTWGKGYCGALGLGDEIEKTTPEIVTGLKNHLAVQVCARKRKTFVLIDSGSVYGFGSMGFGSLGFLDRGVYDKILKPRILDTLKTHRVSQISTGLYHTVAITSSGRIFGFGDNERAQLGHDTLRGCLEPTEIFVKEDSSQENIDPDI* | 378 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo18g1516 | 377 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 318 | 346 | - | - | |
| Amo18g1516 | 377 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 214 | 224 | IPR000408 | - | |
| Amo18g1516 | 377 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 174 | 227 | IPR000408 | - | |
| Amo18g1516 | 377 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 321 | 331 | IPR000408 | - | |
| Amo18g1516 | 377 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 228 | 279 | IPR000408 | - | |
| Amo18g1516 | 377 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 1 | 369 | - | - | |
| Amo18g1516 | 377 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 3 | 13 | IPR000408 | - | |
| Amo18g1516 | 377 | PRINTS | Chromosome condensation regulator RCC1 signature | 176 | 190 | IPR000408 | - | |
| Amo18g1516 | 377 | PRINTS | Chromosome condensation regulator RCC1 signature | 160 | 176 | IPR000408 | - | |
| Amo18g1516 | 377 | PRINTS | Chromosome condensation regulator RCC1 signature | 17 | 33 | IPR000408 | - | |
| Amo18g1516 | 377 | PRINTS | Chromosome condensation regulator RCC1 signature | 330 | 351 | IPR000408 | - | |
| Amo18g1516 | 377 | PRINTS | Chromosome condensation regulator RCC1 signature | 269 | 287 | IPR000408 | - | |
| Amo18g1516 | 377 | PRINTS | Chromosome condensation regulator RCC1 signature | 70 | 86 | IPR000408 | - | |
| Amo18g1516 | 377 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 67 | 117 | IPR000408 | - | |
| Amo18g1516 | 377 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 173 | 224 | IPR000408 | - | |
| Amo18g1516 | 377 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 121 | 169 | IPR000408 | - | |
| Amo18g1516 | 377 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 227 | 268 | IPR000408 | - | |
| Amo18g1516 | 377 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 121 | 173 | IPR000408 | - | |
| Amo18g1516 | 377 | Gene3D | - | 154 | 374 | IPR009091 | - | |
| Amo18g1516 | 377 | Gene3D | - | 1 | 153 | IPR009091 | - | |
| Amo18g1516 | 377 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 280 | 334 | IPR000408 | - | |
| Amo18g1516 | 377 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 21 | - | - | |
| Amo18g1516 | 377 | SUPERFAMILY | RCC1/BLIP-II | 2 | 295 | IPR009091 | - | |
| Amo18g1516 | 377 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 68 | 120 | IPR000408 | - | |
| Amo18g1516 | 377 | PANTHER | BNAA01G28890D PROTEIN | 1 | 369 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo18g1516 | Amo-Chr18 | 29674391 | 29678882 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo18g1516 | - | - | lang:109357264 | 672.93 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Amo18g1516 | 18 | 29674391 | 29678882 | Amo18g1516 | 18 | 29674391 | 29678882 | ECH | |
| Amo18g1516 | 18 | 29674391 | 29678882 | Amo08g1559 | 08 | 25653074 | 25657490 | hybridization |