Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1489 GAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAAGCAACATAGGGCTTCGTTCCCCCCCAAAACCCAATCCCTAATTGGATCTCAACAAAACAAAACAAAACAAAACAAAACAAAGAAACAAACCAATCACTCTTTCTTTTCTCTTTCCTTCTCCAATCCCATCCATGGGAATGCTGCTGCTTCTTCCCGGACAACCATGACCTACGCCGCCGGCCACCACCAAAACGACACCGCCGACCTCTTCTACGAGTCCCTTGACAGGCTACTATCCTCCTCCGAATGCTCTACCTCCACCACCTCCGACACCGAACAAGAACCGCCGCAACACCACCACCACAAGCCCGACGACGGAATTTACAATTATGCCCTCGCACTCAACAACAACTACGACCTCTGGATCTCTCATCCTTCCTCCGTCTCCGAGCGCCGTTCCTCCCTCCTCCGCCACCTCGGTCTCGCCGCTCCCTCGCCCCCGCGCGATAATGGGGACTCTTCCCGCTCCCCGTCGTCGGATCAGTTGACTGGACTGCGTCAGGGCTCCGCCGGAGGGATGCCCCGATCGAGCTCTGACGGTGCCGCGGATCCTCAGAATTCCGTTGGTGATGGTATTGATGATGATGATGAAAAGCCTTGTGGTTCTTGTTCGCTTTCTCGTTCTTCTTGTCGTTGTTGTCGTTCTTGTTCGTCTTCTTCTTCCATTCTTTCTATTCGTTCGGCCGTACCGGAGGCCGGAAAATATGTAAATAGCCGGAATCGTCGCGGAGGCAGTGTTGGTGGTGGCGGTGGAAATGGCGGGTCCCCCTGGAAGCCTCCTTCGGGGAGGAATGGAAAAAGCGTGGATTTTGGGCAGAATGGGTCCATGGTACCGGAGAATGTCGCCGGTGAGGTGGTTGCCGTGGCGGCAGAGGCAGTGGCTAGTGGGGATTATAATGAGGTCAATGAGGAGGCTTGCACCATAAGGGATCTTGACAATGGGAAAGAGTTTGTGGTGAAAGAGTTTAGAGAAGATGGCATGTGGAACAAGTTCAGGGAGGTCGGCACTGGCCGGCAACTGACAATGGAGGAGTTCGAAATGACGGTCGGTCACTCGCCGATTGTCCAAGAGCTCATGAGGAGGCAGAATGTGGAGGAAAGCCATGGAAAGGACAATGTGGATTCAATTGGCAATGAAGGTGGCAAGGGAAACAATGGTTCCAAGTTGAAGAAGAGAGGGAACTGGTTGAGGGCCTTAAAATCCGCGATGGGGACACATAAGGAGCGGCGAAGCAGCGACGAGAGGGACACATCTTCGGAGAAGGGGGGGAGGAGGTCAAGCTCCGCCACGGATGACAGCCAGGATAATGCCTCATTCCATGGACCTGAGAGAGTTAAGGTTAGGCAGTATGGGAAGCCATGTAAGGAGGTCACAGCTCTTTACAAGAGCCAGGAGATTCAGGCTCATAATGGATCTATATGGAGTATTAAGTTTAGCTTAGATGGGAAGTATTTAGCAAGTGCCGGCGAGGATTGTGTGATCCATGTGTGGCAGGTTGTGGAGTCTGAGAGGAAGGGGGAGCTGCTGATGGAAAAACATGAGGATGGGAATATGAACATGTTGTTTGTTGTCAATGGATCTTCGCTGGAGCCGAATCTGCTGTCCCCTCTCATGGACAAGTCACCTCTCTTGGACAATCATCATCCAGAGAGGAAGAGGAAGGGGAGGACATCCATTACCCGGAAATCGTTGAGCTTGGATCAATTAGTTATCCCGGATACCGTGTTTGCGCTCACCGAGAAACCCATTTGCTCCTTTCAGGGACATCTTCATGATGTGCTTGACCTCTCTTGGTCCAAATCTCAGCACTTGCTCTCATCTTCAATGGACAAAACGGTGCGGTTGTGGCATTTGTCTAGCAACTCTTGTTTGAAAGTTTTTTCACACAGTGACTTTGTAACTTGCATCCAGTTTAATCCTGTTGATGATAATTACTTCATTAGCGGATCCTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATAGGCAGGTTGTTGATTGGACTGATATGCATGAGATGGTTACTGCTGCTTGTTATACACCCGATGGTCAGAGTGCACTGGTTGGTTCTTACAAGGGCAGTTGCCACTTATATAACACATCAGAAAATAAGTTGCAACAAAAAAGTCAGATCAATCTGCAGAACAAGAAGAAGAAATCACATCTAAAAAAAATTACAGGTTTCCAGTTTGCCCCAGGAAGTTCATCAGAGGTACTTATCACATCTGCTGATTCACGAATTCGGGTTGTTGATGGTGTTGATCTGGTTCACAAGTTTAAAGGGTTCCGTAATTCGTCAAGCCAAATTTCAGCCTCTCTGACAGCCAACGGTAAATATATTGTCTCCGCGAGTGAGGATTCCCACGTGTACATATGGAAAAATGAAGCGGATTGTAGGCCTAACAGAAGCAAAGGTGTAACTATCACAGGTGCATACGAACATTTCCACTGTAAAGATGTTTCAGTGGCCATTCCATGGCCAGGTATGGGCGATGCCTGGGACATGCACGATACACTTTCTGGAGAGCAAACTGAGATTGATAACAATGTGGATGAGGCCTTGTCCGCCAATCATCCTCCAACCCCCGTCGAGGAAAACTTTGGCTCCGAGGGTTCACGATCCACATCGGTTTACAGCAATAGTCCGCGCCAGGCAACCATTGCAGGTGCCACAAACAGCTACTTTTTCGATAGAATTTCTGCAACATGGCCGGAGGAAAAACTTGTCGTGGCAGCCACAAAGAATCGAAGCCCTCGTATCAGCGGAGATTACTCAAACACAGGAAGTCAAAACATGTCAGCCTGGGGTATGGTGATTGTAACTGCTGGCCTTCGAGGTGAAATTAGAACTTTCCAAAATTTTGGATTGCCACTTCGGATATAA 2922 0.4932 EREREREREKRKQHRASFPPKTQSLIGSQQNKTKQNKTKKQTNHSFFSLSFSNPIHGNAAASSRTTMTYAAGHHQNDTADLFYESLDRLLSSSECSTSTTSDTEQEPPQHHHHKPDDGIYNYALALNNNYDLWISHPSSVSERRSSLLRHLGLAAPSPPRDNGDSSRSPSSDQLTGLRQGSAGGMPRSSSDGAADPQNSVGDGIDDDDEKPCGSCSLSRSSCRCCRSCSSSSSILSIRSAVPEAGKYVNSRNRRGGSVGGGGGNGGSPWKPPSGRNGKSVDFGQNGSMVPENVAGEVVAVAAEAVASGDYNEVNEEACTIRDLDNGKEFVVKEFREDGMWNKFREVGTGRQLTMEEFEMTVGHSPIVQELMRRQNVEESHGKDNVDSIGNEGGKGNNGSKLKKRGNWLRALKSAMGTHKERRSSDERDTSSEKGGRRSSSATDDSQDNASFHGPERVKVRQYGKPCKEVTALYKSQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLMEKHEDGNMNMLFVVNGSSLEPNLLSPLMDKSPLLDNHHPERKRKGRTSITRKSLSLDQLVIPDTVFALTEKPICSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSNSCLKVFSHSDFVTCIQFNPVDDNYFISGSLDAKVRIWSIPDRQVVDWTDMHEMVTAACYTPDGQSALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHLKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNSSSQISASLTANGKYIVSASEDSHVYIWKNEADCRPNRSKGVTITGAYEHFHCKDVSVAIPWPGMGDAWDMHDTLSGEQTEIDNNVDEALSANHPPTPVEENFGSEGSRSTSVYSNSPRQATIAGATNSYFFDRISATWPEEKLVVAATKNRSPRISGDYSNTGSQNMSAWGMVIVTAGLRGEIRTFQNFGLPLRI* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1489 973 MobiDBLite consensus disorder prediction 414 440 - -
Amo18g1489 973 SUPERFAMILY WD40 repeat-like 473 807 IPR036322 GO:0005515
Amo18g1489 973 MobiDBLite consensus disorder prediction 152 210 - -
Amo18g1489 973 MobiDBLite consensus disorder prediction 247 281 - -
Amo18g1489 973 ProSiteProfiles Trp-Asp (WD) repeats profile. 598 638 IPR001680 GO:0005515
Amo18g1489 973 Gene3D - 576 825 IPR015943 GO:0005515
Amo18g1489 973 MobiDBLite consensus disorder prediction 161 196 - -
Amo18g1489 973 ProSiteProfiles Trp-Asp (WD) repeats profile. 478 519 IPR001680 GO:0005515
Amo18g1489 973 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 638 672 - -
Amo18g1489 973 MobiDBLite consensus disorder prediction 93 116 - -
Amo18g1489 973 MobiDBLite consensus disorder prediction 375 459 - -
Amo18g1489 973 SMART WD40_4 591 629 IPR001680 GO:0005515
Amo18g1489 973 SMART WD40_4 719 764 IPR001680 GO:0005515
Amo18g1489 973 SMART WD40_4 765 806 IPR001680 GO:0005515
Amo18g1489 973 SMART WD40_4 673 712 IPR001680 GO:0005515
Amo18g1489 973 SMART WD40_4 471 510 IPR001680 GO:0005515
Amo18g1489 973 SMART WD40_4 632 671 IPR001680 GO:0005515
Amo18g1489 973 PRINTS G protein beta WD-40 repeat signature 616 630 IPR020472 -
Amo18g1489 973 PRINTS G protein beta WD-40 repeat signature 658 672 IPR020472 -
Amo18g1489 973 PRINTS G protein beta WD-40 repeat signature 497 511 IPR020472 -
Amo18g1489 973 MobiDBLite consensus disorder prediction 552 571 - -
Amo18g1489 973 MobiDBLite consensus disorder prediction 18 45 - -
Amo18g1489 973 Pfam WD domain, G-beta repeat 477 509 IPR001680 GO:0005515
Amo18g1489 973 Pfam WD domain, G-beta repeat 768 806 IPR001680 GO:0005515
Amo18g1489 973 Pfam WD domain, G-beta repeat 593 628 IPR001680 GO:0005515
Amo18g1489 973 Pfam WD domain, G-beta repeat 634 671 IPR001680 GO:0005515
Amo18g1489 973 PANTHER WD REPEAT DOMAIN 44 74 973 IPR040324 -
Amo18g1489 973 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 74 973 - -
Amo18g1489 973 MobiDBLite consensus disorder prediction 1 16 - -
Amo18g1489 973 Gene3D - 417 541 IPR015943 GO:0005515
Amo18g1489 973 MobiDBLite consensus disorder prediction 1 45 - -
Amo18g1489 973 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 598 632 - -
Amo18g1489 973 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 478 511 - -
Amo18g1489 973 MobiDBLite consensus disorder prediction 873 893 - -
Amo18g1489 973 ProSiteProfiles Trp-Asp (WD) repeats profile. 638 672 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1489 Amo-Chr18 28582221 28588314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1489 595 764 Miscellaneous Gene Families AT5G08390 25.143 2.31e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1489 K20241 - pvy:116142805 1048.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1489 18 28582221 28588314 Amo18g1489 18 28582221 28588314 ECH