Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1335 ATGGCTGCACAAAACTCTCAGACTCAGTTCCAAGATTACTTGCCCTTCATGGCCAACAAGCTTGGTGGGGATGGCCTAATTGATGAGCTATGCAATGGTTTCAATCTCTTGAAGGATTCAGATAAAGGGGTTATAACGTTTGAGAGCCTCAAGAAGAATTCAGCTTTGCTTGGCCTTCAAGGGTTGAGTGATGAGGACCTTAAGTCAATGGTCTTGGAAGGGGACTTTGATGGTGATGGTGCACTCAACCAGATGGAGTTCTGTGTTTTGATGTTCAGATTGAGCCCTGAACTCATGGAAGGTTCAAAGTTGTGGCTGGACCATGTTCTTCAACAAGAACTCCAAGATTATTCTTTCTAA 360 0.4389 MAAQNSQTQFQDYLPFMANKLGGDGLIDELCNGFNLLKDSDKGVITFESLKKNSALLGLQGLSDEDLKSMVLEGDFDGDGALNQMEFCVLMFRLSPELMEGSKLWLDHVLQQELQDYSF* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1335 119 ProSiteProfiles EF-hand calcium-binding domain profile. 62 97 IPR002048 GO:0005509
Amo18g1335 119 Pfam EF-hand domain pair 42 93 IPR002048 GO:0005509
Amo18g1335 119 PANTHER CALCIUM-BINDING PROTEIN KIC 1 117 IPR044205 GO:0005509
Amo18g1335 119 PANTHER CALCIUM-BINDING PROTEIN KRP1 1 117 - -
Amo18g1335 119 SUPERFAMILY EF-hand 5 91 IPR011992 -
Amo18g1335 119 Gene3D - 7 118 - -
Amo18g1335 119 ProSitePatterns EF-hand calcium-binding domain. 75 87 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1335 Amo-Chr18 24325918 24326866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1335 4 114 EF-hand Containing Proteins AT4G27280 64.286 9.32e-49 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1335 K24345 - gmx:100500465 208.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1335 18 24325918 24326866 Amo18g1335 18 24325918 24326866 ECH