Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1236 ATGGCAGCATCAGCAGCTATGGCTGCTCTTCAGAGCTCCATGACGTCACTCTCACTGTCTTCCAACTCCTTCCTCGGACAGCGTCTCTCTCCTCCTTCTCCCCTTCTGAGTAAGTCGGCAGAGAATCCATGTCTTATTGTAATGAAGCTTAAGCGATGGGAGCGAAAGAAATGTAAACCAAACAGTCTTCCCATCTTGCACAAGATGCATGTTAAAGTCGGAGATACAGTGAAGATCATATCTGGACATGAAAAGGGAAAAGTAGGGGAGATTGTCAGGCTCTTCAAGCATAACAGCACTGTCATAGTGAAAGACATAAATTTGAAAACGAAGCACATGAAGAGTAGAGAGGAAGGGGAACCAGGGCAAATTATTAAGATTGAAGGGCCTATCCACAGCTCAAATGTGATGCTGTACTCCAAAGACCAGAATGTTGCGAGCCGCGTTGGTCATAAAGTCCTTGACAATGGTAAAAGAGTCAGGTACCTTATAAAAACTGGAGAGATAATTGATAGTGCAGAGAACTGGAAGAAACTGAAAGAGGAAGACAAGAAAACTGAAGAAGTTGCAACCACCTAG 579 0.4404 MAASAAMAALQSSMTSLSLSSNSFLGQRLSPPSPLLSKSAENPCLIVMKLKRWERKKCKPNSLPILHKMHVKVGDTVKIISGHEKGKVGEIVRLFKHNSTVIVKDINLKTKHMKSREEGEPGQIIKIEGPIHSSNVMLYSKDQNVASRVGHKVLDNGKRVRYLIKTGEIIDSAENWKKLKEEDKKTEEVATT* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1236 192 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 106 170 IPR003256 GO:0003735|GO:0005840|GO:0006412
Amo18g1236 192 Pfam KOW motif 73 104 IPR005824 -
Amo18g1236 192 ProSitePatterns Ribosomal protein L24 signature. 74 91 IPR005825 GO:0003735|GO:0005840|GO:0006412
Amo18g1236 192 Gene3D - 64 169 IPR014722 -
Amo18g1236 192 SUPERFAMILY Translation proteins SH3-like domain 67 169 IPR008991 -
Amo18g1236 192 Hamap 50S ribosomal protein L24 [rplX]. 69 165 IPR003256 GO:0003735|GO:0005840|GO:0006412
Amo18g1236 192 PANTHER 50S RIBOSOMAL PROTEIN L24, CHLOROPLASTIC 7 191 - -
Amo18g1236 192 SMART kow_9 70 97 IPR005824 -
Amo18g1236 192 CDD KOW_RPL26 74 138 IPR041988 GO:0003723
Amo18g1236 192 TIGRFAM rplX_bact: ribosomal protein uL24 68 170 IPR003256 GO:0003735|GO:0005840|GO:0006412
Amo18g1236 192 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 7 191 IPR003256 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1236 Amo-Chr18 21744757 21747831 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1236 K02895 - zju:107431561 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1236 18 21744757 21747831 Amo18g1236 18 21744757 21747831 ECH
Amo18g1236 18 21744757 21747831 Amo08g1412 08 22976135 22979123 hybridization