Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1235 ATGGAGGAAGCACTTAATAAGATGGTGATGAAAGTTGATCCTTCTTCAACAACATACTGTGTTACTGGAGCCACTGGGTACATTGGTTCATACCTTGTAGAGATTCTTCTTCAAAGAGGCTACAAAGTTCATGCCACTCTCAGAGATCCTGAAAAATCACTACACCTAATGTCAGTGTGGGGTGGAGGTGACCGATTGAGATTGTTCAAAGCAGATTTGAATGAAGAAGGAAGCTTCGATGAGGCTCTAAAAGGCTGCGATGGTGTTTTCCATGTTGCAGCTTCTATGGAATTCAACGTCGACGACAAACAAAACATTGAATCTTATGTTCAAGAAAACATAATAGACCCTGCAATCAAAGGAACCTTAAACCTTCTGAATTCATGCTTGAAGTACAAGAATTCAGTGAAAAGGGTTGTGTTCACATCTTCCATAAGTACCATAACTGCCAAGGACAATGATGGAAAATGGAAACAAACAGTTGATGAATCTTGCCAAGTACAACCCCATCATGTATGGAACACACAAGCAAGTGGATGGGTTTATGCACTTTCAAAGCTTCAAAGTGAAGAAGCAGCATTTAAATTTGCAAAAGAGAACGAAATTGATCTTGTGTCAGTTATAACAACCACTGTTGCAGGCCCATTTTTCACGGCCAATGTACCTTCCAGTCTTAAAGTTCTTCTCTCACCAATTACAGGTGAACCTCAATTTTACAAGATATTAAATGCTGTGAATTCAAGAATGGGGTCAATAGGTTTGGTTCACATTGAAGACATATGCAATGCACACATATTTCTAATGGAGAATGACAGAGCACAAGGTAGATACATATGCAGCAGCCTAAGTTGTCCATTGTCAAAGTTGGCTAATCTTCTTCACCAACACTATTCTCACCCAAACATCAAAAGGGTTGCTGAGAATAATTATGACAAAGTTCCTTGTGAGATTTCCTCAAACAAGTTAAATGATCTTGGATTTAGCTACAAGCATGGCCTTGAAGATATAATCAATCAAACAATCATGTGTTGTTTAGATTATGGTTATTTACCTCCTATTAGCTAA 1065 0.384 MEEALNKMVMKVDPSSTTYCVTGATGYIGSYLVEILLQRGYKVHATLRDPEKSLHLMSVWGGGDRLRLFKADLNEEGSFDEALKGCDGVFHVAASMEFNVDDKQNIESYVQENIIDPAIKGTLNLLNSCLKYKNSVKRVVFTSSISTITAKDNDGKWKQTVDESCQVQPHHVWNTQASGWVYALSKLQSEEAAFKFAKENEIDLVSVITTTVAGPFFTANVPSSLKVLLSPITGEPQFYKILNAVNSRMGSIGLVHIEDICNAHIFLMENDRAQGRYICSSLSCPLSKLANLLHQHYSHPNIKRVAENNYDKVPCEISSNKLNDLGFSYKHGLEDIINQTIMCCLDYGYLPPIS* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1235 354 Pfam NAD dependent epimerase/dehydratase family 20 272 IPR001509 -
Amo18g1235 354 Gene3D - 9 351 - -
Amo18g1235 354 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 15 341 - -
Amo18g1235 354 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 15 341 - -
Amo18g1235 354 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 349 IPR036291 -
Amo18g1235 354 CDD FR_SDR_e 19 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1235 Amo-Chr18 21738435 21743232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1235 13 341 Miscellaneous Gene Families AT4G27250 58.806 1.06e-132 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1235 - - ccaj:109815084 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1235 18 21738435 21743232 Amo18g1235 18 21738435 21743232 ECH
Amo18g1235 18 21738435 21743232 Amo08g1411 08 22969317 22974487 hybridization