Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1195 ATGTGGGGAGATAATGGAGTTCCTGCTGATTCTTTCTATCAAATTCGYCCTGAGTGCATCAACGATGTTCCCGTTTCAAGATTTAAGATCAAGCCCGGTAAAACACTGAGTCCAAGAAAATGGCATGCTGCTTTTACTGAAGAAGGATATCTGGATATAGGAAAGATTCTAAGGCGAATCTACAGAGGGGGAATCCATCCATCAATTAGGGGAGAAGTTTGGGAATTTCTACTTGGTTGTTATGATCCAAAGAGTACATTTGATGAACGAGAACAAATAAGACAGCGTCGSAGGTTAGAATATGCTAGATGGAAGGAAGAATGTCGCCAAATGTTTCCTTTTGTTGGAAGTGGTAGATATATTTCATCTCCTGTAATTACCGATGATGGTCAACCGATTCAAGATCCATCAGTTCTTCTGGAATCAAATCCAGACAAGGGATTGGTGACAGACAAGAGAGTAATCCAGTGGCTGTTAACTCTTCATCAAATAGGTCTTGACGTGATTCGCACTGATAGGACATTGGTCTTTTATGAGAAGCAAGAGAACTTGTCAAAATTATGGGATATTCTTGCAGTTTATGCTTGGCTAGATAAAGATGTTGGCTATGGTCAAGGGATGAGTGACCTATGCTCACCTATGATAATTCTTCTTGAGGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTCTAATGCGCAGACTTCGAGGTAATTTCAAGTGCACTGATCGTTCTGTTGGAGTGGAGACTCAACTAAGTAACTTGGCTTCAATTACTCAAGTATTAGATCCAAAACTTCATAAACATTTAGAGCAACTAGGTGGAGGTGATTATCTGTTTGCTTTTCGGATGCTAATGGTTCAGTTTCGTCGAGAATTTTCCTTTTGTGATTCACTATACCTTTGGGAGATGATGTGGGCTCTAGAGTATGATCCTGATTTGTTTTGGATGTACGAGGATGCTCRGAGAGCTCCTACAAGCGCCGAGAGCTCTAGAGGGAAGGTGAAGTCAATTAGACAATGTGGAAAGTATGAGCGAGAAAATATGAGAACAGGGGCAAAGAACTCCGAAACTCCTCTTCCTATATCAATTTTCCTTGCTGCTAGTGTGTTGAAAGATAAAAGTTCAAAGCTACTACATGAAGCACGGGGTCTGGATGATGTTGTGAAGATTTTGAATGACATGACTGGAAATCTAGATGCTAAAAAGGCTTGTTCCGGGGCTATGAAACTTCATAAAAAATATTTGAGAAAGGCCAAGAAAACGTAA 1269 0.4043 MWGDNGVPADSFYQIRPECINDVPVSRFKIKPGKTLSPRKWHAAFTEEGYLDIGKILRRIYRGGIHPSIRGEVWEFLLGCYDPKSTFDEREQIRQRRRLEYARWKEECRQMFPFVGSGRYISSPVITDDGQPIQDPSVLLESNPDKGLVTDKRVIQWLLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWLDKDVGYGQGMSDLCSPMIILLEDEADAFWCFERLMRRLRGNFKCTDRSVGVETQLSNLASITQVLDPKLHKHLEQLGGGDYLFAFRMLMVQFRREFSFCDSLYLWEMMWALEYDPDLFWMYEDAXRAPTSAESSRGKVKSIRQCGKYERENMRTGAKNSETPLPISIFLAASVLKDKSSKLLHEARGLDDVVKILNDMTGNLDAKKACSGAMKLHKKYLRKAKKT* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1195 422 Gene3D - 245 422 - -
Amo18g1195 422 Pfam Rab-GTPase-TBC domain 153 307 IPR000195 -
Amo18g1195 422 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 140 421 - -
Amo18g1195 422 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 115 - -
Amo18g1195 422 SMART tbc_4 61 334 IPR000195 -
Amo18g1195 422 ProSiteProfiles TBC/rab GAP domain profile. 64 309 IPR000195 -
Amo18g1195 422 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 247 415 IPR035969 -
Amo18g1195 422 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 150 239 - -
Amo18g1195 422 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 140 421 - -
Amo18g1195 422 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 1 115 - -
Amo18g1195 422 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 40 269 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1195 Amo-Chr18 20708930 20713348 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1195 - - adu:107462412 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1195 18 20708930 20713348 Amo18g1195 18 20708930 20713348 ECH
Amo18g1195 18 20708930 20713348 Amo08g1388 08 22660346 22664807 hybridization