Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1192 ATGATTTCCTCAAGCAAACTCAAATCCGTTGATTTCTACAGAAAAATCCCTAGAGATTTAACTGAGGCATCACTATCTGGAGCGGGGTTATCCATAGTAGCAGCTCTTTCCATGATCTTTTTATTTGGAATGGAACTCAGTAATTATTTGTCTTTCAGCACCACTACATATGTGATTGTTGACAAGAGTTCTGACGGGGAGTTTTTACGTATAGATTTCAATATCAGTTTTCCTGCACTTTCATGCGAGTTTGCATCRGTTGATGTGAGTGAYGTGCTGGGAACAAACAGACTGAATATAACAAAAACAGTTCGCAAGTTTTCTATTGATACAAATTTAAGACCCACTGGGGCTGAATTTCATTCAGGGACAACTGCAAACATCATTAAACATGATGAGCTAGTAGAGGAAGAATCAGTTGAAGGTTCTCTTACACTTACATCACGCAATTTTGATAAATATTCTCGTCTGTTTCCAATTACAGTTGTAAATTTTTATGCTCCTTGGTGTTACTGGAGTCAACGCTTGAAACCTTCATGGGAGAAAGCAGCTAAAATAATAAAAGAGAGATATGATCCAGAGATCGATGGCCGTATTGTTTTGGGGAAGGTAGATTGCACRGAAGAAGGAGATTTATGCCGGAGCCATCACATACAAGGGTATCCATCAATTCGTATCTTCCGTAAAGGAAGTGATATCAGAGATGACCATGGAGATCATGATCATGAGTCCTATTATGGAGATCGTGATACAGATAGCCTAGTCAAGACAATGGAGAAGTTAGTGGCTTCTCTCCCTGCAGAATCTCAGAAGCTAGGTTTGGAGGATAAATCCAATGGTACAGAGTACAGAAAAAGACCTGCACCTTTAGCTGGGGGATGTAGAATTGAAGGATATGTGCGTGTCAAAAAGGTTCCAGGAGATTTGGTTATATCAGCTAGATCTGATGCCCATTCTTTCGATGCTTCTCAAATGAACATGTCACATGTCGTACACCATCTATCTTTTGGACGGAAATTGTCACCTAGGGTTTTGAGTGATGTGAAGCGCTTGATACCTTATGTTGGTAGCAGCCATGAAAGGTTGAATGGYCGGTCATTCATCAATACRCGTGATTTAGGAGCAAATGTTACTATGGAGCATTACCTCCAGATAGTTAAAACAGAGGTGATTACTGGAAAAGATTATAAATTAGTTGAGGAGTATGAATACACAGCACACAGCAGTGTAGCACAGAGTKTACACATTCCTGTGGCAAAGTTCCATCTTGAGCTCTCCCCCATGCAGGTCTTAGTAACAGAAAACCCGAAATCTTTTTCACATTTTATAACAAATGTCTGTGCTATCATTGGGGGTATTTTCACGGTAGCTGGAATTTTGGACTCGATTCTGCACAACACTATTAGACTAATGAAAAAAGTTGAGCTTGGCAAAAACTTTTGA 1443 0.3957 MISSSKLKSVDFYRKIPRDLTEASLSGAGLSIVAALSMIFLFGMELSNYLSFSTTTYVIVDKSSDGEFLRIDFNISFPALSCEFASVDVSDVLGTNRLNITKTVRKFSIDTNLRPTGAEFHSGTTANIIKHDELVEEESVEGSLTLTSRNFDKYSRLFPITVVNFYAPWCYWSQRLKPSWEKAAKIIKERYDPEIDGRIVLGKVDCTEEGDLCRSHHIQGYPSIRIFRKGSDIRDDHGDHDHESYYGDRDTDSLVKTMEKLVASLPAESQKLGLEDKSNGTEYRKRPAPLAGGCRIEGYVRVKKVPGDLVISARSDAHSFDASQMNMSHVVHHLSFGRKLSPRVLSDVKRLIPYVGSSHERLNGRSFINTRDLGANVTMEHYLQIVKTEVITGKDYKLVEEYEYTAHSSVAQSXHIPVAKFHLELSPMQVLVTENPKSFSHFITNVCAIIGGIFTVAGILDSILHNTIRLMKKVELGKNF* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1192 480 SUPERFAMILY Thioredoxin-like 144 261 IPR036249 -
Amo18g1192 480 Pfam Endoplasmic reticulum vesicle transporter 291 461 IPR012936 -
Amo18g1192 480 ProSiteProfiles Thioredoxin domain profile. 126 263 IPR013766 -
Amo18g1192 480 Pfam Thioredoxin 145 242 IPR013766 -
Amo18g1192 480 Gene3D Glutaredoxin 130 285 - -
Amo18g1192 480 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 7 97 IPR039542 -
Amo18g1192 480 CDD PDI_a_family 144 258 - -
Amo18g1192 480 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-3 1 480 - -
Amo18g1192 480 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 1 480 IPR045888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1192 Amo-Chr18 20681900 20688266 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1192 - - gmx:100806869 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1192 18 20681900 20688266 Amo18g1192 18 20681900 20688266 ECH
Amo18g1192 18 20681900 20688266 Amo08g1385 08 22635520 22641864 hybridization