Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0351 ATGTTTTCGGGAGTGACAAGTCTGGTGAACAGGGGACACAAGATTAAGGGCACGGTGGTGCTGATGCGCAAGAACGTCCTTGACATCAACTCCCTTACCAGCGCTCAGGGACTCATCGGCCAAGGCCTCGGCTTCGTCGGCTCAACCATCGATAATCTCACGGCCTTCTTGGGCCGCTCTGTCTCCCTCCACCTCATTAGTGCCACCAAACCAGATGGGAATGGGAAGGGCAAAGTTGGAAAGAGCACGTTTTTGGAAGGCATAATATCTTCGTTGCCAACATTGGGAGCAGGGCAATCTGCATTCACTATTCATTTCGAATGGGATGATGGTGAGATGGGAATTCCAGGAGCATTTTACATCAAGAATTTCATGCAAACTGAGTTCTTCCTCCTTACTTTGACTCTTGAAGACATTCCAAACCATGCAAATCTCAAAATCCACTTTGTTTGCAACTCCTGGATTTATAATGCTAAAAACTACAAAACCGATCGCATTTTCTTTTCCAACAAGACATATCTTCCAAGTGACACGCCAGCACCACTTGTAAAGTACAGGGAAGATGAATTGAAGAATTTAAGAGGAGATGGAAAAGGAGAGCGCAAAGAATATGATAGGATCTATGATTATGATGTTTACAATGATTTGGGGAATCCAGATAGCAATGAAAAATATGCTCGCCCTGTTCTTGGAGGATCTACTTTACCTTACCCTCGTAGAGGAAGAACAGGAAGACCAACCACTAACAAAGATCCTAAGAGCGAGAAACGGAGCGATTTTGTTTACCTACCAAGGGACGAAGCATTTGGTCACTTGAAGTCATCAGATTTTCTAACTTATGGACTAAAATCTGTAGCACAAGATGTGATGCCTGTTCTCACAGATGCATTTGATTCAAATATCTTAACTCTTGAGTTTGATGATTTTGCTGAAGTGGATAAACTCTATACTGGTGGAATTACACTACCTACAAACTTTCTCAGCAAGTTTTCCCCTTTGCCAGTACTCAAGGAAATTCTACGAACAGATGGTGAACAATTCCTTAAATATCCACCACCCAAAGTCATGCAAGTGAATAAATCTGCATGGATGACTGATGAAGAATTTTCTAGAGAAACACTAGCTGGTGTAAATCCTAATGTCATTAAGAGTCTTGAGGAGTTTCCACCAGGTAGCAAGCTAGATAGTAAAGTCTATGGTGATCATACTAGTACAATGAAAAAAGAACATTTAGAGCCTAACTTAGAAGGGCTTACTGTAGAACAGGCTATTGAGAAAAAGAAATTGTTCATTCTAGATCACCATGACTATTTGATTCCATATTTGAGAAGAATAAATTCAAGCAAGACAAAGGCCTATGCTACAAGGACTATTTTCTTCTTGAAAGATGATGGAACTTTAAAGCCACTGGCCATTGAGCTAAGCAAGCCACATCCTCAAGGAGAAGAGCATGGTCCTGTGAGTGATGTCTATCTACCAGCACATGAAGGAGTTGAAGGTTATATTTGGGTACTGGCCAAGGCATATGTTGTTGTAAATGACTCATGCTATCACCAACTTGTTAGTCATTGGTTAAACACTCATGCAGTTGTTGAACCATTCGTGATAGCAACAAATAGGCATTTGAATGTGGTTCACCCCATTAATAAACTACTTTCCCCACACTACCGTGACACCATGAATATAAATTCACTTGCTCGGAAAGCCTTGATTAATGCAGATGGTATTATAGAACAAACATTCTTGTGGGGTAGATATGCTTTGGAAATGTCTGCTGTACTCTATAAGGATTGGGTTTTTCTAGATCAAGCATTACCTAATGATCTCATCAAGAGAGGAGTGGCAGTTAAGGATTCATCTTCTCCCCATGGTGTGCACCTTGTGATTGAGGATTACCCTTATGCTTCTGATGGATTAGAAATATGGGATGCTATTAAATCATGGGTTAAAGAGTATGTGTTCTTTTACTACAACTCAGATGATGCACTAAAACAAGACACTGAACTCCAAGAATGGTGGAAAGAGCTTGTAGAGGTAGGTCATGGTGACAAGAAGAATGAGACATGGTGGCCAAAGATGGAAACTCGAAACGAGTTGATTGAAGCTTCAACCACTCTCATATGGATTGCTTCAGCACTTCATGCAGCTATTAATTTTGGCCAATACCCTTATGGAGGTTACATTCTTAACCGTCCAACACTTAGCAGAAGATTCATGCCTGAGAAAGGGTCTCCTGAGTATGATGAATTGGCTAAGAATCATGAGAAGGAGTTCTTGAAAACAATCACAGGGAAGAAAGAGACACTAATTGATCTTACAGTTATTGAAATTTTGTCAAGGCATGCTTCTGATGAGTCCTACCTTGGACAAAGGGATGATGGTGAGTTTTGGACTTGTGATACTGAGGCATTAGATGCCTTTAAGAGATTTGGAAAGAAACTTGCAGAGACTGAACAAAGATTGATGCAGAAGAACAATGATGGATCATTGAAAAATCGTTCTGGACCAGCTAAGATGCCTTACACTTTGCTTTATCCTTCTAGTGAGGAAGGGTTGACTTTCAGAGGAATTCCAAATAGTATCTCTATCTAA 2592 0.4062 MFSGVTSLVNRGHKIKGTVVLMRKNVLDINSLTSAQGLIGQGLGFVGSTIDNLTAFLGRSVSLHLISATKPDGNGKGKVGKSTFLEGIISSLPTLGAGQSAFTIHFEWDDGEMGIPGAFYIKNFMQTEFFLLTLTLEDIPNHANLKIHFVCNSWIYNAKNYKTDRIFFSNKTYLPSDTPAPLVKYREDELKNLRGDGKGERKEYDRIYDYDVYNDLGNPDSNEKYARPVLGGSTLPYPRRGRTGRPTTNKDPKSEKRSDFVYLPRDEAFGHLKSSDFLTYGLKSVAQDVMPVLTDAFDSNILTLEFDDFAEVDKLYTGGITLPTNFLSKFSPLPVLKEILRTDGEQFLKYPPPKVMQVNKSAWMTDEEFSRETLAGVNPNVIKSLEEFPPGSKLDSKVYGDHTSTMKKEHLEPNLEGLTVEQAIEKKKLFILDHHDYLIPYLRRINSSKTKAYATRTIFFLKDDGTLKPLAIELSKPHPQGEEHGPVSDVYLPAHEGVEGYIWVLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLNVVHPINKLLSPHYRDTMNINSLARKALINADGIIEQTFLWGRYALEMSAVLYKDWVFLDQALPNDLIKRGVAVKDSSSPHGVHLVIEDYPYASDGLEIWDAIKSWVKEYVFFYYNSDDALKQDTELQEWWKELVEVGHGDKKNETWWPKMETRNELIEASTTLIWIASALHAAINFGQYPYGGYILNRPTLSRRFMPEKGSPEYDELAKNHEKEFLKTITGKKETLIDLTVIEILSRHASDESYLGQRDDGEFWTCDTEALDAFKRFGKKLAETEQRLMQKNNDGSLKNRSGPAKMPYTLLYPSSEEGLTFRGIPNSISI* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0351 863 SUPERFAMILY Lipoxigenase 174 863 IPR036226 -
Amo18g0351 863 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 6 863 - -
Amo18g0351 863 PANTHER LIPOXYGENASE 6 863 IPR000907 GO:0016702|GO:0046872
Amo18g0351 863 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 173 IPR036392 GO:0005515
Amo18g0351 863 Gene3D - 362 495 - -
Amo18g0351 863 Gene3D - 496 862 - -
Amo18g0351 863 Pfam PLAT/LH2 domain 69 168 IPR001024 GO:0005515
Amo18g0351 863 Gene3D PLAT/LH2 domain 4 173 - -
Amo18g0351 863 MobiDBLite consensus disorder prediction 220 257 - -
Amo18g0351 863 ProSitePatterns Lipoxygenases iron-binding region signature 2. 545 555 IPR020834 GO:0016702|GO:0046872
Amo18g0351 863 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 172 863 IPR013819 GO:0016702|GO:0046872
Amo18g0351 863 ProSiteProfiles PLAT domain profile. 41 169 IPR001024 GO:0005515
Amo18g0351 863 CDD PLAT_LH2 13 170 IPR042057 -
Amo18g0351 863 PRINTS Plant lipoxygenase signature 139 157 IPR001246 GO:0016491
Amo18g0351 863 PRINTS Plant lipoxygenase signature 165 186 IPR001246 GO:0016491
Amo18g0351 863 PRINTS Plant lipoxygenase signature 204 220 IPR001246 GO:0016491
Amo18g0351 863 PRINTS Plant lipoxygenase signature 236 255 IPR001246 GO:0016491
Amo18g0351 863 PRINTS Plant lipoxygenase signature 303 324 IPR001246 GO:0016491
Amo18g0351 863 PRINTS Plant lipoxygenase signature 348 364 IPR001246 GO:0016491
Amo18g0351 863 PRINTS Plant lipoxygenase signature 387 406 IPR001246 GO:0016491
Amo18g0351 863 PRINTS Plant lipoxygenase signature 453 477 IPR001246 GO:0016491
Amo18g0351 863 PRINTS Plant lipoxygenase signature 775 789 IPR001246 GO:0016491
Amo18g0351 863 PRINTS Lipoxygenase signature 500 517 IPR013819 GO:0016702|GO:0046872
Amo18g0351 863 PRINTS Lipoxygenase signature 518 535 IPR013819 GO:0016702|GO:0046872
Amo18g0351 863 PRINTS Lipoxygenase signature 538 558 IPR013819 GO:0016702|GO:0046872
Amo18g0351 863 Pfam Lipoxygenase 182 846 IPR013819 GO:0016702|GO:0046872
Amo18g0351 863 ProSitePatterns Lipoxygenases iron-binding region signature 1. 518 532 IPR020833 GO:0016702|GO:0046872
Amo18g0351 863 SMART LH2_4 13 170 IPR001024 GO:0005515
Amo18g0351 863 Gene3D - 273 361 IPR027433 -
Amo18g0351 863 Gene3D - 174 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0351 Amo-Chr18 4729596 4733688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0351 1 863 Acyl Lipid Metabolism Gene Families AT1G55020 56.689 0.0 1005
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0351 K15718 - gmx:547860 1399.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0351 18 4729596 4733688 Amo13g0566 13 7194961 7199060 PCT
Amo13g0566 13 7194961 7199060 Amo18g0351 18 4729596 4733688 PCT