Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0272 ATGGTGAGCATGAGCTTCAAGCTCATAATGTGGAATGTGCTTCTTCCCTTGCTGCTCCTGGCATCTTCATTCTTTGTTTCTTGTAATGCTTCTGTGTCCTATGACTCAAAGGCTATCACCATTAATGGCCAAAGAAGGATCCTCATTTCTGGATCCATTCATTACCCTAGAAGCACCCCTGAGATGTGGCCAGATCTCATTCAAAAGGCTAAGGAAGGAGGTTTGGATGTGATTCAGACTTATGTTTTCTGGAATGGCCATGAACCTTCACCTGGCAAATATTATTTTGAGGGAAACTATGATCTGGTGAAGTTCATAAAGTTGGTGCAGCAAGCAGGCCTTTATGTGCATCTAAGGATTGGTCCTTATGTCTGTGCTGAGTGGAACTTTGGGGGTTTCCCTGTTTGGCTGAAGTACATTCCAGGTATCAGCTTCAGAACAGACAATGGCCCTTTTAAGTTTCAAATGCAAAAGTTTACCACGAAGATTGTCGATATGATGAAGGCAGAAAGATTATATGAAACTCAGGGAGGTCCAATAATTCTATCCCAGATTGAAAATGAATATGGACCTATGGAGTATGAAATTGGTGCTTCTGGTAAGTCCTACACTAAGTGGGCAGCAGATATGGCTGTAGGACTTGGTACTGGGGTTCCATGGGTCATGTGCAAACAAGATGATGCTCCTGATCCTATGATTAACACTTGCAATGGTTTCTATTGTGATTACTTCTCTCCAAATAAGGCTTACAAACCAAAGATGTGGACGGAAGCTTGGACTGCATGGTTTACTGAATTCGGAGGTTCGGTTCCTTATCGACCTGCTGAAGATTTGGCATTTGCAGTTGCAAGATTTATACAGAAAGGGGGAGCATTTGTCAATTATTACATGTATCACGGGGGAACAAATTTCGGTAGAACTGCTGGTGGTCCATTTATTGCTACAAGCTATGATTATGATGCACCTATTGATGAATATGGACTTCTCAGGCAGCCGAAGTGGGGTCATCTTAAAGATTTACATAGAGCAATAAAACTCTGTGAACCTGCTTTAGTTTCGGGGGATCCTGCTGTAACAAAGATTGGAAACTATCAAGAGGCTCATGTCTTCAAATCAGACTCAGGAGCTTGTGCTGCATTCCTTGCAAACTATGACCCAAAATCTTTTGCAAAAGTGGCATTTGGGAATATGCACTATAACCTGCCTCCTTGGTCTATTAGCATTCTTCCTGACTGCAAGAACACTGTTTATAACACTGCAAGGGTTGGTTCGCAGAAGGCACAGATGAAGATGACCCGAATTCCCATTCATGGAGGACTCACTTGGCAATCATTTAATGAAGAACCAGCCTCTACTGATGACAGTTCCTTCACCATGACTGGCCTATTGGAACAGTTAAATACAACTAGAGATTTATCTGACTACCTTTGGTACTCCACAGATGTTGTGATTGATTCCAATGAAGGATTTTTGTGGAATGGAAAGGATCCTGTTCTTACAGTGTTATCTGCTGGGCATGCCTTGCATGTGTTTGTCAATGGTCAGCTATCAGGAACTGCTTATGGAAGCTTAGAATTCCCCAAACTAACATTTAGCCAGGCTGTGAAGCTCAGAGCTGGTGTTAATAAAATCTCTCTTCTAAGTGTTGCAGTTGGACTACCGAATGTTGGTCCACATTTTGAAACATGGAATGCTGGTGTTCTTGGCCCAATTACATTATACGGTCTCAACGAGGGGAGAAGGGACTTGTCTTGGCAGAAATGGTCTTATAAGATTGGTCTTAAAGGAGAAGCCTTGAGTCTCCATTCTCTCAGTGGAATTTCCTCAGTTGACTGGATTCAAGGGTCTTTAATTTCTCAAAGGCAGCCACTGACTTGGTACAAAACTACTTTTGATGCTCCGGCTGGAACCGCACCATTTGGTTTAGATATGGGCAGCATGGGCAAAGGTCAAGTGTGGCTAAATGGACAGAGTCTCGGTCGATACTGGCCTGCTTATAAAGCATCAGGTACCTGTGATTCTTGTGACTATGCCGGAACTTACAACGAGAATAAATGCAGAAGTAACTGTGGGGAGGCTTCTCAAAGATGGTATCATGTTCCTCATTCATGGCTGAAGCCAACTGGAAATTTATTGGTTGTGTTTGAAGAACTGGCGGGAGATCCCAACGGCATCTTTCTGGTTAGGCGCGATATAGATAGTGTGTGTGCTGATATTTATGAGTGGCAGCCAAATCTTAGAAGCTACCAGATGCAAGCTTCTGGCAAAGCTGACAAACCTATTAGGCCTAAAGTGCATTTATCATGCGGCTTTGGACAAAAGATCTCGTCGATCAAATTCGCTAGCTTCGGTACTCCAGAAGGATCTTGTGGAAACTTCCATGAAGGAAGCTGCCATGCTCACAAATCATATGATGCATTTCAAAGGAATTGTGTTGGACAGAGCTGGTGCACTGTAACAGTGTCACCCGAAAATTTCGGAGGAGATCCATGTCCAAATGTTATGAAGAAACTCTCAGTGGAGGCCATATGTACCTGA 2538 0.431 MVSMSFKLIMWNVLLPLLLLASSFFVSCNASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKFQMQKFTTKIVDMMKAERLYETQGGPIILSQIENEYGPMEYEIGASGKSYTKWAADMAVGLGTGVPWVMCKQDDAPDPMINTCNGFYCDYFSPNKAYKPKMWTEAWTAWFTEFGGSVPYRPAEDLAFAVARFIQKGGAFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPIDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGDPAVTKIGNYQEAHVFKSDSGACAAFLANYDPKSFAKVAFGNMHYNLPPWSISILPDCKNTVYNTARVGSQKAQMKMTRIPIHGGLTWQSFNEEPASTDDSSFTMTGLLEQLNTTRDLSDYLWYSTDVVIDSNEGFLWNGKDPVLTVLSAGHALHVFVNGQLSGTAYGSLEFPKLTFSQAVKLRAGVNKISLLSVAVGLPNVGPHFETWNAGVLGPITLYGLNEGRRDLSWQKWSYKIGLKGEALSLHSLSGISSVDWIQGSLISQRQPLTWYKTTFDAPAGTAPFGLDMGSMGKGQVWLNGQSLGRYWPAYKASGTCDSCDYAGTYNENKCRSNCGEASQRWYHVPHSWLKPTGNLLVVFEELAGDPNGIFLVRRDIDSVCADIYEWQPNLRSYQMQASGKADKPIRPKVHLSCGFGQKISSIKFASFGTPEGSCGNFHEGSCHAHKSYDAFQRNCVGQSWCTVTVSPENFGGDPCPNVMKKLSVEAICT* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0272 845 Gene3D - 609 735 - -
Amo18g0272 845 SUPERFAMILY Galactose-binding domain-like 586 751 IPR008979 -
Amo18g0272 845 Pfam Glycosyl hydrolases family 35 39 343 IPR031330 -
Amo18g0272 845 Gene3D - 761 845 IPR043159 -
Amo18g0272 845 Pfam Beta-sandwich domain in beta galactosidase 351 422 IPR041392 -
Amo18g0272 845 PANTHER BETA-GALACTOSIDASE 10 839 - -
Amo18g0272 845 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Amo18g0272 845 SUPERFAMILY Galactose-binding domain-like 406 577 IPR008979 -
Amo18g0272 845 Pfam Galactose binding lectin domain 767 844 IPR000922 GO:0030246
Amo18g0272 845 ProSiteProfiles SUEL-type lectin domain profile. 759 845 IPR000922 GO:0030246
Amo18g0272 845 SUPERFAMILY (Trans)glycosidases 31 348 IPR017853 -
Amo18g0272 845 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 177 189 IPR019801 GO:0004553|GO:0005975
Amo18g0272 845 PANTHER BETA-GALACTOSIDASE RELATED 10 839 IPR001944 GO:0004553|GO:0005975
Amo18g0272 845 Gene3D Glycosidases 28 348 - -
Amo18g0272 845 PRINTS Glycosyl hydrolase family 35 signature 63 81 IPR001944 GO:0004553|GO:0005975
Amo18g0272 845 PRINTS Glycosyl hydrolase family 35 signature 254 269 IPR001944 GO:0004553|GO:0005975
Amo18g0272 845 PRINTS Glycosyl hydrolase family 35 signature 118 137 IPR001944 GO:0004553|GO:0005975
Amo18g0272 845 PRINTS Glycosyl hydrolase family 35 signature 291 306 IPR001944 GO:0004553|GO:0005975
Amo18g0272 845 PRINTS Glycosyl hydrolase family 35 signature 175 190 IPR001944 GO:0004553|GO:0005975
Amo18g0272 845 PRINTS Glycosyl hydrolase family 35 signature 311 327 IPR001944 GO:0004553|GO:0005975
Amo18g0272 845 PRINTS Glycosyl hydrolase family 35 signature 622 636 IPR001944 GO:0004553|GO:0005975
Amo18g0272 845 PRINTS Glycosyl hydrolase family 35 signature 649 665 IPR001944 GO:0004553|GO:0005975
Amo18g0272 845 PRINTS Glycosyl hydrolase family 35 signature 42 59 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0272 Amo-Chr18 3760247 3765037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0272 5 844 Glycoside Hydrolase AT3G13750 78.929 0.0 1432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0272 - - gmx:100811187 1613.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0272 18 3760247 3765037 Amo09g0197 09 2065615 2072117 hybridization
Amo18g0272 18 3760247 3765037 Amo19g0496 19 7333887 7340496 PCT
Amo18g0272 18 3760247 3765037 Amo09g0197 09 2065615 2072117 PCT
Amo19g0496 19 7333887 7340496 Amo18g0272 18 3760247 3765037 PCT
Amo09g0197 09 2065615 2072117 Amo18g0272 18 3760247 3765037 PCT