Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3140 ATGGCGACGGCGTCAGAGCCCTCCGCCTCCGCCGCAGACGACGAGGAACGCCGCCGCTCCCTTCAAATCGAGTCTCTCCATCTCGTGGACTTCCGCCAACTCTCCCAATCGGAGCTTTACTCGCTCTCCCTAACCTCCTCACCCGCCCAACACCGTTGCCAAGACGACGCCGTAATCCCTAAAATCGACCGCTCCGTCTTCAACGAGTCCGCCGGCAGCCGCAAGCAGACGTTCTCCCGCCTTCGCCTCGTACCGCGTGGTAAGCAACCCAAACCCGCCCCTTCCCCTCCCGCCTCCGCCGCCCACATTCCCCTTGACGAAGAAAACTCCAAAATCATAGAAATGCTTCAGAAGCTCTTCGGCGTGGAGTCTCTCCGCACCGCCGCGCGAGACGGCGGGGGAGGAGGCAGCAGCGTAGGCTATAACGCACTCGTCCCCTTCCAGGGGGAGTTCAAGTCACCGGAGCCGAACGTCTTCGCGCTCCAGAACATTCCGATCTGCGACGTCGCGGACGATAGCGCGATGAAGAAGCGGAAGCGAGGGCGGCCGCGGAAGAACGAGAATTCGATGGCGATTGTGCCAGTAGCATCGCCTCTTCCTCCGCCGCCTCCACCGAAGAAGAAGGAAGATGGTGAGGGTTTTGTTGACCCGGTTTTGGAAGAGGTGAAGAAGAGGACGGTGGGGTTAGAGAATGAGGCTCAGGTTGTTGAGTTCTTGGAGGGTTTGAAGGGAGAGTGGAGTAGTCAAAGGAAGAAGAAGATGACTGTCGAGGCGAGTGAGCTTGGTTCTTTCTTGCCGGCTGGGTGGAAGGTCTTGCTTTCTGTCAAGAAGAGAGCCGGTCGTGCTTCCATTGTTTGTCGCCGTTACGTAAGCCCTTATGGGCAGCAGTTTGAGTCGTTCAAGGAAGTCTCTGCACACTTGCTTTCGTTTTGTGGAGAAGATATAAATATTGTAAAATCTAGTTATCCCGATGACAGTCCGCAGTATAATATCAATGTGCCATCTGGAAGTCAGGTTCTTTGTTACGGCCCTGCTGGAGACGTAAAGCCTGATGCTGATGCAAGCTGTCTAAGTTTAGCTAGAACATCTGTAGAATCTCACCATAAAACGCAAGTTAGTGTTCCATCATCAACTGAAAGAGAGAAGCTAAACACTCTGAATGAGAATTCCAGTAGCTCTTTGGCTGGGGGTTGTAAATTAGGAGATTTTATTGGTGGAGTCTTTGACTATCAAACTGCAAATTATCGATCCATGATGGATGGTACCCATAATGTAAATTCAGTTCGCGGATGTTCAATTGAGGAAGATAGAGTTCTAAATCAGAACACGGTTGATATCATTGAAGTTAGTGGTGCTGCCTGCAATCCTATTCCTTTGGTTCTCCCAACTCCTGTCACCAATAATGAGAGTGGTATTATTCAACATTGTGATGAAATGAATTCTGTGACGTGCATAAGAAATGGTGTTAGTGATTTTAGTACCAAATGCCATGAAACTGCTCCCTGGGGAAATGCACAAACACTTGTTGACAACAATGGGGATGGTGTTTCTGAGAGACTAGTGGAAGATGAGCAGAATGTAGGTTCTGGAAGCAACAGGCCTTTTCCAAATGCTGAGGGGAAACGGTTTATAGGCAACAATTTAGAGATTAGTGATGGAAAGCTTGCTAAGGATGACAAGCAACACATTTTGTGTAGTGATCAGTCTGAAGTTAAAGATGTTTCTAGTAATTCTCAATTGCAGAGTAGTTCTGATGGATTTTCTCTTCCTCCATCTCAGAAAGAAATGAAACATTTTTCTATAAATTGTTCAGACAGAATGCAAAGTTTTATGCTGACAGAGTCTGCTATCGGAGACTGTTTTGACGGTGAATTATTACCTATTGACAAGAGAATTTCCCTTCCCACTGGCCACACAAATAATGTTTCTTTAAGCACGTGCACAGAAGGTGCCTCTGACTGTGGTGGGGTTGATGTTGCCCCTAATCTTTCAGTAGGAAATAATGTCAATGATAATCACGATCCTCCAACTGTTGAGCTTGTGACAAGCTTTGCAGAGGAAAAGAATCCATTGAATGACCAAAATCACAGAATAGACTATTTGTTGCAGACAAGTTCGAAATGTAACTTACTAACTCCTCCTGATGATGAGCAACCCTCGATTTTTGAAAATCTGTATGATATTTCTGCTGGTACCTTTGATGATGCTTTCATGGAGCCTCAATTAGGGCTTGGTTCTCACAATAATGATGTTGCAATAGATACATATGCTAATGAAAGCATTATGCAGGGAACATTGCAAGGTTGTGAATCTGTTGCTCTTGGTAGCAGTGTTTTAAACCCATTTGATAAGCAAAGTGATAATGCAAATAAATCTTGCTTATCAGAGAATGCCAAGAGTGAGCAAGTTGACATACTTCAAACCAACTCTATGGGTATGCCTGACTTTCATTAG 2454 0.4654 MATASEPSASAADDEERRRSLQIESLHLVDFRQLSQSELYSLSLTSSPAQHRCQDDAVIPKIDRSVFNESAGSRKQTFSRLRLVPRGKQPKPAPSPPASAAHIPLDEENSKIIEMLQKLFGVESLRTAARDGGGGGSSVGYNALVPFQGEFKSPEPNVFALQNIPICDVADDSAMKKRKRGRPRKNENSMAIVPVASPLPPPPPPKKKEDGEGFVDPVLEEVKKRTVGLENEAQVVEFLEGLKGEWSSQRKKKMTVEASELGSFLPAGWKVLLSVKKRAGRASIVCRRYVSPYGQQFESFKEVSAHLLSFCGEDINIVKSSYPDDSPQYNINVPSGSQVLCYGPAGDVKPDADASCLSLARTSVESHHKTQVSVPSSTEREKLNTLNENSSSSLAGGCKLGDFIGGVFDYQTANYRSMMDGTHNVNSVRGCSIEEDRVLNQNTVDIIEVSGAACNPIPLVLPTPVTNNESGIIQHCDEMNSVTCIRNGVSDFSTKCHETAPWGNAQTLVDNNGDGVSERLVEDEQNVGSGSNRPFPNAEGKRFIGNNLEISDGKLAKDDKQHILCSDQSEVKDVSSNSQLQSSSDGFSLPPSQKEMKHFSINCSDRMQSFMLTESAIGDCFDGELLPIDKRISLPTGHTNNVSLSTCTEGASDCGGVDVAPNLSVGNNVNDNHDPPTVELVTSFAEEKNPLNDQNHRIDYLLQTSSKCNLLTPPDDEQPSIFENLYDISAGTFDDAFMEPQLGLGSHNNDVAIDTYANESIMQGTLQGCESVALGSSVLNPFDKQSDNANKSCLSENAKSEQVDILQTNSMGMPDFH* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3140 817 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 255 327 IPR001739 GO:0003677
Amo17g3140 817 SUPERFAMILY DNA-binding domain 261 310 IPR016177 GO:0003677
Amo17g3140 817 MobiDBLite consensus disorder prediction 574 593 - -
Amo17g3140 817 MobiDBLite consensus disorder prediction 174 211 - -
Amo17g3140 817 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 4 381 - -
Amo17g3140 817 Pfam Methyl-CpG binding domain 259 307 IPR001739 GO:0003677
Amo17g3140 817 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 4 381 IPR037472 -
Amo17g3140 817 MobiDBLite consensus disorder prediction 368 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3140 Amo-Chr17 135742943 135747564 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3140 - - ahf:112706180 1497.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3140 17 135742943 135747564 Amo17g3140 17 135742943 135747564 ECH