Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3103 ATGCTTCACCAGCCTTTGCTCTGCGGCTCAAGAGCTGCCACCACCGCTCACTCCACACTCTTCGCTTCCTCACTTTCTGGCGGCATCAACGCCTCCCGCACTTCATTCGCCGGAAACTCCTTCCCCGGTCACTTCGGATTGAAATTGAACACGCAAGCTTCGGGAAGCAAATCAAATAAAACTCGTGGAGTTTTCAACGAGGGAAGGAACAGTGGCAAACTTAGGACAAGTAATGTTCACGGTGCTCGTGCAACAGAGGGTGTAACTGAGGAAGAAGCCTTACAAGTGATTGAGAGCAGACCATCATGGAAAACCTTTCCAGGCCAGGCATTTCCATTGGGTGTATCAGAAGTTGACAATGGGATCAATTTTGCTATTTTTTCACAGAATGCAACTGCTGTCACACTTTGTTTAGTCCCTCCTGAGAGTGGAAGCATGGATGCACTGGATGGTGGCATGATAGAATTGGCTTTGGATCCTCGTTTAAACAAAACAGGGGACGTTTGGCACATTTGCATTGAGGATCTGCCTCGGAGCAATGTTCTGTATGGATATCGCATAGATGGGCCTCAAGACTGGGGTAAGGGGCATCGATTTGACAGCAACATTGTGCTTGTTGATCCTTATGCAAAACTAATAGAAGGTCGGCGATATTTTGGGGACATTAGCATGAAGTTGTTTAAGTTTCTCGGCACATATGATTTTGACAGCTTACCTTTTGACTGGGGAGAAAATTGCAAGCTTCCAAATATTCCTGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACAAGTGATGAATCTAGTGGGCTGGAAAATAACATTCGTGGTAGCTATCTTGGCGTGATTGAGAAGATCCCACACCTTCTAGAGCTTGGTATCAATGCAGTGGAGTTGCTACCTGTCTTTGAGTTTGACGAATTGGAGTTCCAAAGGCGACCGAACCCCAGAGATCACATGATCAATACATGGGGTTATTCAACAATAAATTTCTTTTCCCCTATGAGTCGCTATGCTAGTGCTGGTGGAGGACCAGTTAATGCTTCCCGGGAATTCAAGTTAATGGTTAAAGCTTTACATTCTGCTGGCATAGAGGTTATTTTGGATGTTGTCTATAATCATACTAATGAGGCAGATGATCCTAATCCTTACACTACTTCATTTCGTGGTATAGATAATAAGGTTTACTACATGTTGGACAATGATGGTCAACTACTGAACTACTCTGGCTGTGGAAATACATTGAATTGTAACCATCCTGTGGTCATGGAGCTCATCCTTGACAGCCTAAGACACTGGGTCACTGAATATCATGTGGATGGATTTCGATTTGATCTTGCAAGTGTCCTTTGTCGAGGAACTGATGGTTCCCCCCTTAACGCTCCCCCTCTGATTAGGGCAATTGCTAAAGATGCAGTCTTATCGAGATGTAAAATTATTGCAGAGCCTTGGGACTGTGGAGGTCTTTATCTTGTTGGAAGTTTCCCAAATTGGGATCGATGGGCTGAATGGAATGGGAAATACCGTGATGATTTGCGGAAATTTTTCAAGGGTGATGCTGGTATGAAGGGGAGTTTTGCAACTCGGGTTGCTGGATCTTCTGATCTTTATAAAGTGAACAACCGTAGACCATATCATAGTATTAACTTTGTTATTGCACACGATGGGTTTACCTTGTATGATCTTGTGTCATACAATTGCAAGCACAATGAAGCCAATGGCGAAGGTGGAATGGATGGAAGCAATGACAATTTTAGTTGGAACTGTGGTTTTGAAGGGGAAACTGATGATGCTAGCATAAAAGCTTTACGTTCACGACAAATGAAAAACTTCCATTTGGCATTGATGATATCTCAGGGCACACCTATGATGCTAATGGGAGACGAATATGGCCACACTCGCTATGGAAATAACAATAGTTATGGGCATGATTCTTCTATTAATAATTTCTTGTGGGGTCAGTTGGATGCGCGGAAGAATGACCACTTTAGGTTTTTCTCCAAAGTTATAGAGTACCGGCATGCACATAAAGTATTCAGTCATGAAAATTTTCTCAGCAAGACTGATATCACGTGGCATGAACACAATTGGGACAACTATGAAAGCAAATTTCTTGCATTCACTCTTCATGACAACAGTGGAGGAGACATCTATTTGGCATTTAATGCTCATGACTTCTTTGTTGAGGTTATGCTTCCAACACCTCCAACTAAGAGGAGCTGGTTTCGTGTGGTGGATACTAATCTTGTCTCTCCCGATGACTTTAACCTTGATGGTCTCCCCTGCAAAGGAAACACCTACAACATTGCACCATACTCCTCCATTCTTCTTGAGGCCAAGTTTTCATTGGAGAATCCCCCTCTCACAATTGTACAATAA 2388 0.4305 MLHQPLLCGSRAATTAHSTLFASSLSGGINASRTSFAGNSFPGHFGLKLNTQASGSKSNKTRGVFNEGRNSGKLRTSNVHGARATEGVTEEEALQVIESRPSWKTFPGQAFPLGVSEVDNGINFAIFSQNATAVTLCLVPPESGSMDALDGGMIELALDPRLNKTGDVWHICIEDLPRSNVLYGYRIDGPQDWGKGHRFDSNIVLVDPYAKLIEGRRYFGDISMKLFKFLGTYDFDSLPFDWGENCKLPNIPEKDLVIYEMNVRAFTSDESSGLENNIRGSYLGVIEKIPHLLELGINAVELLPVFEFDELEFQRRPNPRDHMINTWGYSTINFFSPMSRYASAGGGPVNASREFKLMVKALHSAGIEVILDVVYNHTNEADDPNPYTTSFRGIDNKVYYMLDNDGQLLNYSGCGNTLNCNHPVVMELILDSLRHWVTEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDLRKFFKGDAGMKGSFATRVAGSSDLYKVNNRRPYHSINFVIAHDGFTLYDLVSYNCKHNEANGEGGMDGSNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHDSSINNFLWGQLDARKNDHFRFFSKVIEYRHAHKVFSHENFLSKTDITWHEHNWDNYESKFLAFTLHDNSGGDIYLAFNAHDFFVEVMLPTPPTKRSWFRVVDTNLVSPDDFNLDGLPCKGNTYNIAPYSSILLEAKFSLENPPLTIVQ* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3103 795 PANTHER GLYCOGEN DEBRANCHING ENZYME 93 782 - -
Amo17g3103 795 MobiDBLite consensus disorder prediction 52 78 - -
Amo17g3103 795 Pfam Alpha amylase, catalytic domain 281 388 IPR006047 GO:0005975
Amo17g3103 795 SUPERFAMILY E set domains 107 243 IPR014756 -
Amo17g3103 795 SUPERFAMILY Glycosyl hydrolase domain 690 783 - -
Amo17g3103 795 CDD AmyAc_Glg_debranch 240 679 - -
Amo17g3103 795 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 112 210 IPR004193 GO:0004553|GO:0005975
Amo17g3103 795 Gene3D Immunoglobulins 95 228 IPR013783 -
Amo17g3103 795 MobiDBLite consensus disorder prediction 52 86 - -
Amo17g3103 795 SUPERFAMILY (Trans)glycosidases 239 683 IPR017853 -
Amo17g3103 795 Gene3D Glycosidases 236 690 - -
Amo17g3103 795 Gene3D - 691 788 IPR013780 -
Amo17g3103 795 SMART aamy 260 661 IPR006047 GO:0005975
Amo17g3103 795 CDD E_set_GDE_Isoamylase_N 111 260 IPR044505 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3103 Amo-Chr17 135023188 135036079 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3103 14 783 Glycoside Hydrolase AT4G09020 71.595 0.0 1150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3103 K01214 - gmx:100806342 1378.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3103 17 135023188 135036079 Amo17g3103 17 135023188 135036079 ECH