Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3101 ATGGTTTTCTCTAAAGCATTGGTTTTGGCACTCTTGCTAGCAATGAACATGGCCTTGCCAACCATTGCAACTGTTTACACTGTAGGAGATACCTCAGGTTGGGCCACTGGTGGTGATTATAGCACTTGGGCTAGTGGCAAGAACTTTGTAGTTGGTGATAGCCTTGTTTTTAACTACGGATCCGGGCACACGGTGGACGAGGTGAAAGAAAGCGACTACAAATCATGCAGCACAGGGAATTCCATTAGCACAGATAGCAGTGGCGCCACCACCATACCTCTCAAGACTTCAGGCACACATTACTTCATTTGTAGTGTTCCTGGACACTGTTCTGGTGGAATGAAGCTTGCAGTTACTGTCAAGGATGGAAAATCATCATCATCCACTACTACTCCTTCTTCTTCTGGAAAGGGTTCACCACCTTCCTCAACAACAGCCACACCAAAATCCAATGCATCTTCTTCAGTGAGTAGGGTCACTCCAATTGTTGTGTTGATTGTTTCTTTGATCTCATGCTGTGTTTTGAATATGGTATGA 537 0.4488 MVFSKALVLALLLAMNMALPTIATVYTVGDTSGWATGGDYSTWASGKNFVVGDSLVFNYGSGHTVDEVKESDYKSCSTGNSISTDSSGATTIPLKTSGTHYFICSVPGHCSGGMKLAVTVKDGKSSSSTTTPSSSGKGSPPSSTTATPKSNASSSVSRVTPIVVLIVSLISCCVLNMV* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3101 178 MobiDBLite consensus disorder prediction 123 153 - -
Amo17g3101 178 ProSiteProfiles Phytocyanin domain profile. 24 122 IPR003245 GO:0009055
Amo17g3101 178 ProSitePatterns Type-1 copper (blue) proteins signature. 98 114 IPR028871 -
Amo17g3101 178 Gene3D - 22 127 IPR008972 -
Amo17g3101 178 PANTHER BLUE COPPER PROTEIN-LIKE 7 137 - -
Amo17g3101 178 CDD Phytocyanin 24 120 - -
Amo17g3101 178 Coils Coil 178 178 - -
Amo17g3101 178 SUPERFAMILY Cupredoxins 23 120 IPR008972 -
Amo17g3101 178 Pfam Plastocyanin-like domain 34 114 IPR003245 GO:0009055
Amo17g3101 178 PANTHER BLUE COPPER PROTEIN 7 137 IPR039391 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3101 Amo-Chr17 135016122 135017341 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3101 11 126 Miscellaneous Gene Families AT1G22480 54.310 5.12e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3101 - - gmx:100306522 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3101 17 135016122 135017341 Amo17g3101 17 135016122 135017341 ECH
Amo17g3101 17 135016122 135017341 Amo17g3101 17 135016122 135017341 PCT