Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3077 ATGGCGAGCGCGCTTGAAACCCTCTGCGGCCAAGCTTACGCGGTTGCAGAACGCACCGGTTTGGTTGCCATATGGCTGATCCCTCTTCACCTCAGCTTTCCCTTCCAATTCTCGCTGCAGAGATTCTTGCAGTGTCAGCTCAAGACACGTGTCGCGGCGTGGATGGCAGGTGTTTCGCTTGCCATCCACGTGGCAGTGAGTTTGGTTTTTGTGTCCAAGATGAAGGTTGGGATTGTTGGTGCTGCGCTTTCTATTGGGTTCTCGTGGTGGGTTTCGGTTGTGGGAATGCTTTCGTACACTCTCTTTGGTGGGTGTAAAGATACATGGACTGGTTTCTCTTCTGAAGCTTTTCTTGGACTCTGGGAATTCTTCAAGTTATCTTTTGCTTCTGGCATCATGCTTCTGTTAGAGAATTTCTATTACAGGTTGTTGCTTATAATGTCGGGTTATATGGACAACTCTGAGGTTGCTATCGATGCTCTTTCGGTTTGTAATACTATTTATGCTTGGGAATCCATGATACCTCTTGGATTTTTGGCTGCATCCGGGGTGCGTGTAGCAAATGAGCTTGGCGCAGGCAACGCAAAAGGGGCAAAATTTGCAACAGCTATTTCATTGCTAAACACTGTGGTGGTGGGATTTATATTTTGGTTGATAATTATGATCTTCAATGAGAATCTTGCTTTGATCTTTACATCAAGCTCCGCTATTGTCCAAATGGTCAATGAGCTGTCAATCATGTTGGCTTTTACAATTCTAATTAATTGCCTCCAACCCGTTCTTTCAGGGGTAGCAGTGGGATGTGGAAATCAAGCAATAGTGGCATACGTTAACATTGCAAGTTACTATTTGATGGGAATGCCTCTTGGGATCCTCCTAGGCTGGTTGCTGCCTTCGGGTATTATTGGTATGTGGACGGGAATGTTGAGTGGAACGGTCGGTCAAACGTTGATTTTGATCGTTATTACGATGAGATGTGATTGGGATAAAAAGGTACTGAAAGCACAAGTTATTGTCAAGGAGAAATCACTAGTCTCCAACCATCAAACAATTGATAAGGTATTGCCATCGATGAAGAAACACGGCGCACACGAAGAACATGGCAACCTTACCGAAACCCTCCTCCTTCAACATAACGACCAAAAGATACAACATCAGCTCTGGATCGAGACCAAGAAGCTATGGCACATCGTGGGCCCCTCCATCTTCAGCCGCGTCGCCACCTTCACCATGAACGTCGTCACCCAAGCCTTCGCTGGACACCTCGGCGAACTCGAACTCGCCTCCATCTCCATCGCCAACACCGTCATTGTTGGCTTCAATTTTGGCCTCCTCTTGGGAATGGCCAGCGCGTTGGAGACACTGTGCGGGCAAGCGTTTGGGGCAAAAAAGTACGGCATGCTGGGGATATACATGCAGAGGTCATGGGTGGTTTTGTTTCTGTGCTGCTTCTTGCTCTTGCCATTTTACGTATTTGCCACTCCCATCTTGAAGCTTCTAGGGCAGCCTGATGACGTGGCGGAATGGAGTGGTGTGGTGGCTGTGTGGCTCATCCCTCTTCACTTCAGCTTTGCATTCCAGTTCCCGCTGCAGAGGTTTCTTCAGTGCCAGCTCAAGACGGCGGTGATTGCGTGGGTTTCGTTGCTGGGCCTGGTGGTCAACGTGGTCACCAGCTGGCTGTTCATCTATGTGTGGGACTTTGGAGTTGTCGGTGCTGCCATTGCTCTGAATTTGTCCTGGTGGGTTCTTGTAATTGGGATGTTTGCTTATACTGCTTGCGGCGGTTGCCCATTGACTTGGACCGGTTTTTCCATGGAAGCGTTTTCTGGTCTCTGGGACTTTCTCAAACTCTCTGCTGCTTCTGGTGTCATGCTATGGTATGCTCTAATAGAGAAAATTTACTGTCACTTAGAAAACTGGTATTACAGAATACTGGTGCTAATGACTGGACAGTTAGAGAATGTGACGGTTGCTGTTGATGCCTTAGTAAGGGTAGCAAATGAGCTAGGCGCAGGAAATGGGAAAGGAGCAAAATTTGCAACACAAGTGGCAGTGGCACAATCAATTGTGATTGGGGTTGTGTTCTGCGTGATAATAATGATTTTTCACGACCAATTCGCTTACTTATTCACCTCCAGTCCCCAAGTCCTTGATGCCGTTGACCACATGGCTTTCCTCTTAGCCATCACCATCCTCCTCAACAGTGTTCAACCCATTTTGTCAGGGTGCTATTATGTTATTGGACTCCCTCTTGGAATGATCATGGGATGGATCTTCAAAACTGGCGTCGGAGGTATATGGGGAGGGATGATTTTTGGAGGCACTGGAATTCAGACGCTCATACTCATCGTTGTAACATCACGATGTGATTGGGAAAAGGAGGCTGAAGAAGCTAGTTCCCGGGTAAAGAAGTGGTCAAATTCTAAATCGAACGACCAACTAGAGGGCACCTCTGATCCCCATTAA 2466 0.474 MASALETLCGQAYAVAERTGLVAIWLIPLHLSFPFQFSLQRFLQCQLKTRVAAWMAGVSLAIHVAVSLVFVSKMKVGIVGAALSIGFSWWVSVVGMLSYTLFGGCKDTWTGFSSEAFLGLWEFFKLSFASGIMLLLENFYYRLLLIMSGYMDNSEVAIDALSVCNTIYAWESMIPLGFLAASGVRVANELGAGNAKGAKFATAISLLNTVVVGFIFWLIIMIFNENLALIFTSSSAIVQMVNELSIMLAFTILINCLQPVLSGVAVGCGNQAIVAYVNIASYYLMGMPLGILLGWLLPSGIIGMWTGMLSGTVGQTLILIVITMRCDWDKKVLKAQVIVKEKSLVSNHQTIDKVLPSMKKHGAHEEHGNLTETLLLQHNDQKIQHQLWIETKKLWHIVGPSIFSRVATFTMNVVTQAFAGHLGELELASISIANTVIVGFNFGLLLGMASALETLCGQAFGAKKYGMLGIYMQRSWVVLFLCCFLLLPFYVFATPILKLLGQPDDVAEWSGVVAVWLIPLHFSFAFQFPLQRFLQCQLKTAVIAWVSLLGLVVNVVTSWLFIYVWDFGVVGAAIALNLSWWVLVIGMFAYTACGGCPLTWTGFSMEAFSGLWDFLKLSAASGVMLWYALIEKIYCHLENWYYRILVLMTGQLENVTVAVDALVRVANELGAGNGKGAKFATQVAVAQSIVIGVVFCVIIMIFHDQFAYLFTSSPQVLDAVDHMAFLLAITILLNSVQPILSGCYYVIGLPLGMIMGWIFKTGVGGIWGGMIFGGTGIQTLILIVVTSRCDWEKEAEEASSRVKKWSNSKSNDQLEGTSDPH* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3077 821 CDD MATE_eukaryotic 390 797 IPR045069 GO:0042910|GO:1990961
Amo17g3077 821 PANTHER PROTEIN DETOXIFICATION 663 802 - -
Amo17g3077 821 MobiDBLite consensus disorder prediction 804 821 - -
Amo17g3077 821 PANTHER MULTIDRUG RESISTANCE PROTEIN 372 662 - -
Amo17g3077 821 Pfam MatE 663 745 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo17g3077 821 Pfam MatE 131 291 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo17g3077 821 Pfam MatE 400 560 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo17g3077 821 CDD MATE_eukaryotic 1 334 IPR045069 GO:0042910|GO:1990961
Amo17g3077 821 PANTHER MULTIDRUG RESISTANCE PROTEIN 2 337 - -
Amo17g3077 821 PANTHER MULTIDRUG RESISTANCE PROTEIN 663 802 - -
Amo17g3077 821 TIGRFAM matE: MATE efflux family protein 400 767 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo17g3077 821 TIGRFAM matE: MATE efflux family protein 33 305 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Amo17g3077 821 PANTHER PROTEIN DETOXIFICATION 2 337 - -
Amo17g3077 821 PANTHER PROTEIN DETOXIFICATION 372 662 - -
Amo17g3077 821 MobiDBLite consensus disorder prediction 799 821 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3077 Amo-Chr17 134701467 134723450 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3077 K03327 - gmx:100500204 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3077 17 134701467 134723450 Amo17g3077 17 134701467 134723450 ECH