Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3069 ATGAGTGAATCCATGTCTATGGCTGCTGCGTTAAACCCTCCCAAAACCCCCTTCAAAATCAACCTCACACCCGCTCTTCCGCCTCCCCCAACCTCCTCCGCACTCACTTTCAAACCAAACAACAACTTCCCCACACTCTGCGCCGCCGCACAACCACAACAACAAGAACACGCCGCTCTGCTTGACACTCTACTRAACAGCACKCGCAAGAACCAAGTGCTCCACTCCATCAGAACCACKTCCCCCTTCAACTGCCTCTCCGAAACAAATCTTCACCATACAGTTCCCGCCCTCACCTCCAAAACCAGGGGAAAGGTTAGAGACATATATGATAGTGGAGAGTACCTTGTTCTGGTTACTACTGATCGCCAGAGTGCATTTGATAGAGTCCTTGCTTCAATTCCCTTCAAGGGACAGGTGCTTAACCAGACAAGCTTGTGGTGGTTTGAGAGAACCCAACATATAACTGCTAATGCCGTTGTGTCCACTCCTGATCCTAATGTTACCATAGCAAAGAAATGTTCTGTTTTCCCTGTTGAGTTTGTTGCTAGAGGGTTTGTGACAGGAAGTACTGATACTTCATTATGGACAGTCTACAATAAAGGCATCCGGAACTATTGTGGCAATGCCCTCCCGGATGGTTTGGTAAAAAACCAAAAGCTGGCTGAAAATATACTCACACCTACAACCAAAGCTGCAGATCATGATGTTCCTGTAACTCCAGATGAGATTATAGAAAGGGGATTAATGACAAGAGCTGATTATGAGGAAGTCAGCAGAAAAGCTTTAAGTCTGTTTGAATACGGTCAGCGTGTGGCTTCAGAACATGGCCTTATATTGGTTGATACAAAGTATGAATTTGGGAAGGCAGAGGACGGTTCAATTATGTTGATTGATGAGGTGCACACTCCTGATTCAAGTAGATATTGGATTGCCAGTTCTTATCTTGAGCGCTTTCAAAATGGTTTGGAGCCTGAAAATGTTGATAAGGAGTTCTTGAGGCTGTGGTTCAAAAATCACTGCAACCCTTATGAAGATGAGGTTCTTCCTGAAGCTCCTGAAGATCTTGTTTGCGAATTGTCTTGGCGATACATTTTCTTGTATGAGACTATAACAAAATCAAAGTTTGAGGTGCTGTTGTCTGAGGAGCCAATACATGAGCGAATATCACGAAATGTTGCATCTGCACTGGCATCTTTGAAGTAA 1206 0.4444 MSESMSMAAALNPPKTPFKINLTPALPPPPTSSALTFKPNNNFPTLCAAAQPQQQEHAALLDTLLNSTRKNQVLHSIRTTSPFNCLSETNLHHTVPALTSKTRGKVRDIYDSGEYLVLVTTDRQSAFDRVLASIPFKGQVLNQTSLWWFERTQHITANAVVSTPDPNVTIAKKCSVFPVEFVARGFVTGSTDTSLWTVYNKGIRNYCGNALPDGLVKNQKLAENILTPTTKAADHDVPVTPDEIIERGLMTRADYEEVSRKALSLFEYGQRVASEHGLILVDTKYEFGKAEDGSIMLIDEVHTPDSSRYWIASSYLERFQNGLEPENVDKEFLRLWFKNHCNPYEDEVLPEAPEDLVCELSWRYIFLYETITKSKFEVLLSEEPIHERISRNVASALASLK* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3069 401 Gene3D Phosphorylase Kinase; domain 1 88 177 - -
Amo17g3069 401 SUPERFAMILY SAICAR synthase-like 93 376 - -
Amo17g3069 401 Pfam SAICAR synthetase 102 348 IPR028923 -
Amo17g3069 401 Hamap Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 98 373 IPR028923 -
Amo17g3069 401 ProSitePatterns SAICAR synthetase signature 1. 176 190 IPR018236 GO:0004639|GO:0006164
Amo17g3069 401 ProSitePatterns SAICAR synthetase signature 2. 280 288 IPR018236 GO:0004639|GO:0006164
Amo17g3069 401 Gene3D - 178 321 - -
Amo17g3069 401 CDD SAICAR_synt_Sc 103 372 - -
Amo17g3069 401 PANTHER PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE 50 400 - -
Amo17g3069 401 PANTHER BNAC03G41880D PROTEIN 50 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3069 Amo-Chr17 134528828 134532910 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3069 K01923 - gmx:100801209 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3069 17 134528828 134532910 Amo17g3069 17 134528828 134532910 ECH