Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3066 ATGCTTTCATTGGTGCGCAAGGGAAGAAGCAGCATCATGACGTCATGCTCTCTATTCCTTACTTCTTTTAATTTTTACTCACTCCCTCTTCTTTCTCATTCTCATTACAACACTCTCCCACACGCCCCCACACTCTCACGCGCCCTCGCTTATCCGCGACCCTTCCCCGCAACCATCCTGCCTCCTGGATTTCGCGCTCTTTCTAACAACTTCTCAACAACCAGGGAAGCTTCTGGAACCATGGACTCTTCTGTCTCAGTTACTTACCTCTCGCAGCGCCAAGCTGCTGAGATCGACAACACTCTCATGGGCCCTCTTGGCTTCTCCGTCGACCAGCTCATGGAATTGGCTGGTTTGAGCGTCGCTACTTCCATTGCTGAGGTTTACAAACCAGGTGAGTATAACCGTGTTCTTGTCATATGTGGTCCTGGTAACAATGGTGGCGATGGTTTGGTGGCCGCTCGTCACCTGCACCATTTTGGTTATAAGCCCTCGGTCTGCTACCCCAAGCGCACCCCGAAGCCTCTTTATGAAGGGTTAGTTACTCAGCTCGAAGCTCTGTCAATCCCTTTCTTGTCAGTGGAAGATCTACCTTCGGACTTGTCAAGTGACTTCAGCATTCTAATTGATGCAATGTTCGGATTCTCATTTCATGGTTCTCCAAGACCTCCTTTTGATGATTTGATCCAAAGATTTGTTACCTTACAAAACTATAATCAAAGTGGCCCGAAAAGATCAGTTATTGTCTCTGTAGATATTCCATCTGGATGGCATGTCGAAGAAGGAGATATAAATGGTATAGGCCTTCAACCTGATATGTTGATTTCTTTGACAGCCCCGAAATTATGCGCAAAGAAGTTTAGTGGTCCTCACCACTTTCTAGGAGGTAGATTTGTCCCACCTGCTATTGCAGAAAAATATAAGCTTTTACTTCCGCAATATCCTGGAACTTCCATGTGTGTCCGAATTGGAAAGCCGCCTAAAATTGATATTTCAGCTCTAAGAGAGAACTATATCTCTCCAGAGTTTCTTGAAGAGCAAGTGGAGGCAGACCCCATTAATCAGTTCCGTAAATGGTTTGATGATGCATTAGCTGCTGGTCTGAAGGAACCAAATGCTATGGCATTGTCAACTGTAGGGAAGGATGGAAAACCCTCATCAAGAATGGTATTGCTAAAAGGTGTGGACAAGGATGGTTTTGTGTGGTACACAAACTATGAAAGTCATAAGGCACGTGATTTATCTGAAAATCCTCATGCTTCACTTCTTTTTTACTGGGATGGTCTAAACAGACAGGTAAGAGTGGAGGGGTCTGTTCAGAAAGTATCTGATGAGGAATCAGAGCAGTATTTCCATAGCCGTCCTAGAGGAAGTCAGCTTGGAGCAATAGTTAGTAAGCAGAGTTCTGTAGTGCCTGGAAGGCATGTTCTTCATCAGGAGTACAAAGAGCTTGAGCAAAAATTTTCTGATGGAAGTTTGATCCCTAAACCTAAGAATTGGGGAGGATACAGGCTAACACCGGAGCTTTTTGAATTTTGGCAAGGACAGCAATCTCGCTTGCATGACAGGTTACAATATTCTCCCCAGGAGGTCAATGGACAGAAAGTGTGGAAGGTTGAGCGGTTGGCCCCCTAA 1635 0.4526 MLSLVRKGRSSIMTSCSLFLTSFNFYSLPLLSHSHYNTLPHAPTLSRALAYPRPFPATILPPGFRALSNNFSTTREASGTMDSSVSVTYLSQRQAAEIDNTLMGPLGFSVDQLMELAGLSVATSIAEVYKPGEYNRVLVICGPGNNGGDGLVAARHLHHFGYKPSVCYPKRTPKPLYEGLVTQLEALSIPFLSVEDLPSDLSSDFSILIDAMFGFSFHGSPRPPFDDLIQRFVTLQNYNQSGPKRSVIVSVDIPSGWHVEEGDINGIGLQPDMLISLTAPKLCAKKFSGPHHFLGGRFVPPAIAEKYKLLLPQYPGTSMCVRIGKPPKIDISALRENYISPEFLEEQVEADPINQFRKWFDDALAAGLKEPNAMALSTVGKDGKPSSRMVLLKGVDKDGFVWYTNYESHKARDLSENPHASLLFYWDGLNRQVRVEGSVQKVSDEESEQYFHSRPRGSQLGAIVSKQSSVVPGRHVLHQEYKELEQKFSDGSLIPKPKNWGGYRLTPELFEFWQGQQSRLHDRLQYSPQEVNGQKVWKVERLAP* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3066 544 Pfam Pyridoxamine 5'-phosphate oxidase 360 446 IPR011576 -
Amo17g3066 544 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 500 544 IPR019576 -
Amo17g3066 544 Gene3D - 338 536 IPR012349 -
Amo17g3066 544 TIGRFAM yjeF_nterm: YjeF family N-terminal domain 91 288 IPR004443 -
Amo17g3066 544 SUPERFAMILY FMN-binding split barrel 345 544 - -
Amo17g3066 544 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 510 523 IPR019740 GO:0016638
Amo17g3066 544 TIGRFAM pdxH: pyridoxamine 5'-phosphate oxidase 327 544 IPR000659 GO:0004733|GO:0008615|GO:0010181
Amo17g3066 544 ProSiteProfiles YjeF N-terminal domain profile. 95 311 IPR004443 -
Amo17g3066 544 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 337 544 IPR000659 GO:0004733|GO:0008615|GO:0010181
Amo17g3066 544 Pfam YjeF-related protein N-terminus 111 283 IPR004443 -
Amo17g3066 544 PANTHER NAD(P)H-HYDRATE EPIMERASE 81 529 - -
Amo17g3066 544 PANTHER NAD(P)H-HYDRATE EPIMERASE 81 529 IPR032976 -
Amo17g3066 544 Hamap NAD(P)H-hydrate epimerase [nnrE]. 91 326 IPR004443 -
Amo17g3066 544 Gene3D - 86 328 IPR036652 -
Amo17g3066 544 SUPERFAMILY YjeF N-terminal domain-like 88 318 IPR036652 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3066 K23998 - gmx:100795497 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3066 17 134500423 134507228 Amo17g3066 17 134500423 134507228 ECH