Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3059 AGAGGATTGCACCACAGACCAAGTGTAACCGACTCAGCTGCTGTTGATGAAATTCACGGCGATCGACAACGACGACGACTCGCTCTTTTTCTTCTTCTGCAATGGACTCTGTTCCTTTCCACGATGGCAACATCCACCATATTCTCGAAACCCGATACCTTCACTCTCGCCAACTTGCAGACACACTCCTCGTTGATTCGCAGGCTTACTCAGGAGAGAGAGTTAGAGGGCCACCTTGGCTGTGTCAATGCTGTGGCTTGGAATTCCAGAGGCTCATTATTGATATCTGGATCAGATGATACACGGATCAATATTTGGAACTATGCTGATCGGAAACTTCTACATTCGATTGACACTGGTCATACTGCAAATATTTTCTGTACAAAGTTTATACCAGAAACTTCTGATGAGATTGTAGTCTCMGGAGCTGGAGATGCTGAAGTCCGATTATTTAATTTGTCTCACTTAAATGGATCTGCTGAAAATGCCATTGCTCCATCAGCACTTTACCAATGCCACACAAGGAGAGTCAAGAAGTTGGCTGTTGAAAATGGAAACCCTAACYTGGTATGGAGTGCTAGTGAAGATGGGACCTTGAGGCAGCATGATTTTCGAGAGGGAACATCTTGTCCGCCAGCAGGATCTTCGCACCAAGAGTGTAGAAGTGTTCTACTCGACTTACGGAGTGGAGCCAAAAGGTCACTTGCTGATCCTCCTAAACAAGTTCTAGCCCTAAAATCTTGTGATATCAGCTCAACTAGACCACATCTGCTCCTTGTTGGCGGGAGTGATGCTTTTGCTCGCTTGTATGATCGGAGGATGCTACCACCTTTGAGCTCCTGTCGGAAAAGAATGTCACCACCACCTTGTGTCAATTATTTCTGTCCAATGCATCTTTCCGATCGTATGTTGAAGGGTTCAATTAATGCAATATTCCTGCATCATTGGGGACATCCAAGCTTGCACTTAACTCATGTTACATTTGGTCCTGATGGAGATGAGGTTCTCCTTAGCTATAGTGGAGAGCATGTTTACTTGATGAATTCATACTCATTCATGTACCATGCAGCTGGATTGAATGACATGCAATATACTTCAGGAGATGTATCAAAACTAATGACATATTCTCCAACAATTAATGGAATGGAATTGCAACCTTCTGTATCTAGTGTTTTCCCAAATGGATTTTCAATAAAAAAGAATGTTGCTGCAAAGATTGACTACTGCAGGAAACTAATAAAATACGCTGAAAAGACCTTGAATGATGGTCCTTATTATGGAATTGAGGCATGTAATGAAGTTTTGAATTGCTACAGRCTTACTATTGGGCCTGCACTAAAATATGAATGCCTGTGTATTCGAGCTGCACTATTGCTTAAGAGGAAGTGGAAAAATGATGCTCACATGGCCATAAGGGACTGCTGTGCTGCTAGGAAAATTGATAACTACGACTACAAAGCACTTTACTATATGTCAGATGCATTGTCACAGTTAGGAAGGCACAAAGAAGCATTGGATTTTGCTGTTGCTGCTCAGCTGTTGGCCCCATCCATACCTGAAGTTGCAGAAAGAGTAGAGAAAGCTAAGAAGGACATTTCTTCAGCCGAGGCAGAGAAAAATAACAAGACAAATGATGGAGGATCAAGATTCGATAGTCGAGGTGGGAGAATTTTGTCATTAAGTGACATACTCTATCGTTCGGAGGCTAACAGTGATGCTTCCCAAGATGGTCCAAGATCAGAGAGGGATGACTCTGATTATGATGAGGAGTTGGAGTTGGACTTTGAAACATCAATGTCTGGTGATGAGGGACATGATGTTGAGTCCAATATTCTTCATGGGAGTTTAAACCTTAGAATTCACCGAAGGGGTGACTCCAGAGAAAGCACTGGTGCGAATGGCACTGTTGAATCACCTTCGTCCTCATCACAGAATGACAAAGCTTATCAGTCTGAAGCAGCTATTGACATGAATCAAAGATTTATTGGCCATTGCAATGTTGGAACTGATATAAAACAGGCCAGTTTTCTTGGTCAAAGAGGTGAGTTTGTTGCTAGTGGAAGTGATGATGGCAGATGGTTTATCTGGGAAAAGCGAACTGGTAGACTCATAAAAATGCTGAACGGTGATGAATCTGTTGTAAATTGTGTACAATGCCATCCATTTGATTTTGTTGTGGCAACAAGTGGAATTGATAGCACAATAAAGTTATGGACTCCAAGTGCCCCTGTTCCATCTGCCGTAGCTGGTGGTGCAGCGGGACCAGAGACTGCTGATGTATTGGTTGCTATGGAGAGCAATCAACAAAAGTTATCCCGTGGTCGCCCTTTGAGCTTTTGGAGCCATTTAGAATGCATGAGTTTCCCGAAGGATCCCTGCGCCTGCGTCCTTTTGAATGTGCCCAGAGCTAAACATACACTAATCCTCACATGCTGGTACCGTATCCTGAAGTTGCATGAGTCTGGATTAATCAGTGATGTGTGGAAAACTGGAAATTAA 2499 0.4302 RGLHHRPSVTDSAAVDEIHGDRQRRRLALFLLLQWTLFLSTMATSTIFSKPDTFTLANLQTHSSLIRRLTQERELEGHLGCVNAVAWNSRGSLLISGSDDTRINIWNYADRKLLHSIDTGHTANIFCTKFIPETSDEIVVSGAGDAEVRLFNLSHLNGSAENAIAPSALYQCHTRRVKKLAVENGNPNLVWSASEDGTLRQHDFREGTSCPPAGSSHQECRSVLLDLRSGAKRSLADPPKQVLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCRKRMSPPPCVNYFCPMHLSDRMLKGSINAIFLHHWGHPSLHLTHVTFGPDGDEVLLSYSGEHVYLMNSYSFMYHAAGLNDMQYTSGDVSKLMTYSPTINGMELQPSVSSVFPNGFSIKKNVAAKIDYCRKLIKYAEKTLNDGPYYGIEACNEVLNCYRLTIGPALKYECLCIRAALLLKRKWKNDAHMAIRDCCAARKIDNYDYKALYYMSDALSQLGRHKEALDFAVAAQLLAPSIPEVAERVEKAKKDISSAEAEKNNKTNDGGSRFDSRGGRILSLSDILYRSEANSDASQDGPRSERDDSDYDEELELDFETSMSGDEGHDVESNILHGSLNLRIHRRGDSRESTGANGTVESPSSSSQNDKAYQSEAAIDMNQRFIGHCNVGTDIKQASFLGQRGEFVASGSDDGRWFIWEKRTGRLIKMLNGDESVVNCVQCHPFDFVVATSGIDSTIKLWTPSAPVPSAVAGGAAGPETADVLVAMESNQQKLSRGRPLSFWSHLECMSFPKDPCACVLLNVPRAKHTLILTCWYRILKLHESGLISDVWKTGN* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3059 832 MobiDBLite consensus disorder prediction 617 649 - -
Amo17g3059 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 707 738 IPR001680 GO:0005515
Amo17g3059 832 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 51 777 IPR045151 -
Amo17g3059 832 MobiDBLite consensus disorder prediction 529 554 - -
Amo17g3059 832 MobiDBLite consensus disorder prediction 568 587 - -
Amo17g3059 832 SMART WD40_4 700 739 IPR001680 GO:0005515
Amo17g3059 832 SMART WD40_4 654 697 IPR001680 GO:0005515
Amo17g3059 832 SMART WD40_4 68 107 IPR001680 GO:0005515
Amo17g3059 832 SMART WD40_4 238 271 IPR001680 GO:0005515
Amo17g3059 832 SMART WD40_4 110 152 IPR001680 GO:0005515
Amo17g3059 832 SMART WD40_4 163 203 IPR001680 GO:0005515
Amo17g3059 832 Gene3D Tetratricopeptide repeat domain 397 549 IPR011990 GO:0005515
Amo17g3059 832 SUPERFAMILY TPR-like 446 523 IPR011990 GO:0005515
Amo17g3059 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 75 116 IPR001680 GO:0005515
Amo17g3059 832 Gene3D - 658 755 IPR015943 GO:0005515
Amo17g3059 832 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 75 107 - -
Amo17g3059 832 Coils Coil 518 545 - -
Amo17g3059 832 MobiDBLite consensus disorder prediction 529 546 - -
Amo17g3059 832 Gene3D - 52 160 IPR015943 GO:0005515
Amo17g3059 832 MobiDBLite consensus disorder prediction 629 649 - -
Amo17g3059 832 Pfam WD domain, G-beta repeat 73 107 IPR001680 GO:0005515
Amo17g3059 832 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 51 777 - -
Amo17g3059 832 SUPERFAMILY WD40 repeat-like 68 738 IPR036322 GO:0005515
Amo17g3059 832 Gene3D - 161 351 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3059 Amo-Chr17 134393134 134402809 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3059 K11807 - gmx:100793917 1139.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3059 17 134393134 134402809 Amo17g3059 17 134393134 134402809 ECH