Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3053 ATGCGCTACACCGGGGATCTAGGGTTTTCGAGCCTGGTCCTTTTGGTGCTGTTGCTGCTGCTGATTTGTCTTGTTTTTCCGGCGATCGGATTCTTTTATGTCCGCCGTAAATGGCGGATTTCAGTGGCTAGGAAGGAAGAGATCAGGAGGCTTCTGATTTTGGCTGCTGAGGAAACTGCCAGGGCCGAGAGAGAGTCCACGTATGGTTACGGTGCCGCGGTGGAAACCGCCGTCAAGAGCAATCAGTGTGCCGTGTGCTTTGTTCCCGCCACCGCACGCTGCGCTCAGTGCAAATCGGTTCGCTACTGTTCGTTTGAGTGTCAAACTCTTCATTGGCGCCAAGGGCACAAATTGGAATGCCGTCTGCAAAGAATCCTTCGGCAGAGTGATGTAGTTAGTGATCTTGGCAACAAGGCAACCGAGCAAGAATTCTCTAGAATCGCTGACCAGAAGTCTGAAATTGCAGGTGCAGAGCATGAAGCGTCCGGTGAAAACCAACAAACTTCAGTCGCTGGTGTTTCTTCTAAAGTTTTATATGGAAAAAATGAAAATGTAAGAGATGAGTGCCTTGCAGGGGGAACTATAACAGATTCTAATTCTGAGTTGTCAAGTAACTCTTTTTCTGGCTTCTCAGCTTCTCCAAGTGCTAGTGAATCATCTGATGACTCCTCTATTTGTGAGAGTGTTATATCAAACGAGCATGACCAATCTGATGGACCGATTTTTGTTGATTCAACACTTGACGTTCCAGATAGCACTTCAAGTGACAGTAGCATGGTTGTAGCTATGTCTTCATCACCCAAATTTGCCAGTTTGGTTGAATCAGTTGATGGTTTTTCGACAATGCGTAAATTAAATGAAAGTAGATCTGGTCTTTGTAAAGAAGAAGGAAAACTTGCAAAAAATGGTACTTCAGGTTCAGGTATGCTGAAGGGGGCAACAATCAAGCCTTCCATAGTGTCTTCCGGGTTCTGGGATAGAACTCTTGGCACAACTGGGATTGAAGAAGATGTCAACAGTGACACTTCTCCATCCCATTCGGATGAATCCACTCACAATACAGGATCTGATTCTCAGTCATTTCGCTTTTCGTTTAGTTCCATCGCTCTTATGCAAGCGCAAGATAGTGAGGCAAAGAATTTTGTATCTGATAATGCTTCTCCCAATACTGTTGGGGACAATGTGCCTTGCTCAGGATCAGCATCAACGGAGAATGACAGAGATACAGTGAATTCTTCAAAGGCTACAAATCTTAAATTCATGAACAGCAAAGATTCCATACTTCCAAACCCTGCTGCTGCCCCTGTTTATGAATCTGATCAATTGGAATCTAAAGGCAGCTCTGTGCAACCCTTATCTTGTCTCTACCCACCATCCCCCAGTCCTAGCAAAGGTTCAGGTTGTGCAGATTCTTTGAACGTCCATAACTTGCAATCGTATATTTCTATGGCATCAAATCGTGTTGTAGGAAACCATGGCATCAATTCTAAGTCTGCTGAAATTAGATGCCTGACACGTGACCTTGATTCTAATTTAGTCTGTAGAACTGATGCTCACTCAAATTCCAGTACAAAACATGTGAATAATGGTAATCAATCTGCCACTAGTACGTCGTCTGGGGGTGTTAGCTGTTCTGCAAATTCTAAGAGTGGCTTGAAATCATCTGTTTTAAAAGTTGTTGATCAGTTCCGAGGATCAAATTTCTCAAAGCAGTTTCCACTAGTTTGGAATGATACCGCAGGAAAACAAAGTGATAAGGGTCTTTTTCCTTATGAATTGTTTGTCAAGATTTATAACTCGAACAAGGGGGAGTTTAGCCCATTTGGTCTTATAAATTGTGGGAACAGCTGTTATGCCAATGCTGTACTCCAGTGCTTAGTATTTACACCACCCCTGACTGCATATTTTCTTCAAGGACTACATTCTACAGCATGTGCAAATAAAAAATGTTTCAACTGTGAGTTTGAAAGTTTGATTTTGAAGTCAAAGGATACAAAATATCCACTCTCTCCTAAGGGCATACTCTCCCAACTAAGGAGAACTGGAAGTCAACTTGGTAATGGCAAAGAAGAAGATGCACATGAATTTCTAAGGCATGCCATTGACACAATGCAATCTGTTTGCCTTATGGATGCTGGGGTTGATGTATGTGGTTCATTGGAAGAGGACACTACTTTAATTGGTCTAACATTTGGGGGTTACCTTAGATCAAAGATAAAATGCATGAAATGTGGAGGAAAATCTGAACGTCAGGAAAGGATGATGGATCTTACCGTTGAGATAGAAGGGGACATAGCAACCCTGCAGGAAGCTCTTCGACGATTTACAAGTACCGAGTCTTTGGATGGAGAAAATAAGTACCACTGTGTCAGATGTAAATCTTATGAGAAGGCCAAGAAGAAGCTGACCATTTCTGAGGCACCTAATGTTCTTACAATTGCATTAAAGAGATTTCAGTCAGGAAAGTTTGGGAAGCTTAACAAGCCTATCCAGTTTCCTAAAACTCTTGACTTGGCTCCTTTCATGAGTGGGACTAGTGATAAATCACCTATATACAGACTGTATGGTGTAGTTGTTCACTTGGATATCATGAATGCTGCCTTTTCTGGTCACTATGTGAGCTATGTGAAGAATAGTCAAAACAAGTGGTTCAAGGTTGATGACAGTGTGGTGACACCTGTTGAGGTGGAGAGAGTCTTAACAAAAGGATCATATATGCTTTTTTATGCAAGGTGTTCACCCAAGGCCCCAAGATCAATCAGAGGCAAGACATTGTCCCCAGAATCAAAAGGCAAAGTAACCGGAAAGACCGCAACGAAAACTCGGAATGTATCTATAACTTCTGGTCCTGCTGAATATATCAGTAGTCCAGATGGTTCACCCACCTTGGACTCCTTCTATTCAAAGTTTCACCACCTGAAGAGAGTTTTAGAAGATGACTCGTCAAGTGACAATTCATCGCTAATCAGCAGCAATTCCGACTTAGGTTCTTGCAGCACCGATAGCACTCATGATTCGACTACCACAGATGAGTTCTCCAATTATATTTTCGGTGATTCAAGGGTCGGCTGGGGTAGCCCATGGAGGAACTCCGAATCCGACACCTCATCCTCCACCTCTTCCTCATCTTCTCCCCTGAACTTCAGGCATTCACCCCTAGCCGATGTGGACCGATATGATTCAGTTTCTCATGGTTCAAGTGCAGATATAGATGGCAATTTGTACAGGAACAAAATGGGGCATGCAGAAAGAAAAGGAGGTGTTGTGCCTCTCTCACATTCAGACACTCTACACCATAGGAAGTTAGAAAGTACTAGGATTAGCAGCAACAGTAATTTTAGGGATACTAACTCTCATCAGAGACTAGGATCTAACCATTTTAATGGCATAAGCTCTGGTGCACCTTGTAGAAAACCAAGGGACAGAACGGATTGA 3435 0.4297 MRYTGDLGFSSLVLLVLLLLLICLVFPAIGFFYVRRKWRISVARKEEIRRLLILAAEETARAERESTYGYGAAVETAVKSNQCAVCFVPATARCAQCKSVRYCSFECQTLHWRQGHKLECRLQRILRQSDVVSDLGNKATEQEFSRIADQKSEIAGAEHEASGENQQTSVAGVSSKVLYGKNENVRDECLAGGTITDSNSELSSNSFSGFSASPSASESSDDSSICESVISNEHDQSDGPIFVDSTLDVPDSTSSDSSMVVAMSSSPKFASLVESVDGFSTMRKLNESRSGLCKEEGKLAKNGTSGSGMLKGATIKPSIVSSGFWDRTLGTTGIEEDVNSDTSPSHSDESTHNTGSDSQSFRFSFSSIALMQAQDSEAKNFVSDNASPNTVGDNVPCSGSASTENDRDTVNSSKATNLKFMNSKDSILPNPAAAPVYESDQLESKGSSVQPLSCLYPPSPSPSKGSGCADSLNVHNLQSYISMASNRVVGNHGINSKSAEIRCLTRDLDSNLVCRTDAHSNSSTKHVNNGNQSATSTSSGGVSCSANSKSGLKSSVLKVVDQFRGSNFSKQFPLVWNDTAGKQSDKGLFPYELFVKIYNSNKGEFSPFGLINCGNSCYANAVLQCLVFTPPLTAYFLQGLHSTACANKKCFNCEFESLILKSKDTKYPLSPKGILSQLRRTGSQLGNGKEEDAHEFLRHAIDTMQSVCLMDAGVDVCGSLEEDTTLIGLTFGGYLRSKIKCMKCGGKSERQERMMDLTVEIEGDIATLQEALRRFTSTESLDGENKYHCVRCKSYEKAKKKLTISEAPNVLTIALKRFQSGKFGKLNKPIQFPKTLDLAPFMSGTSDKSPIYRLYGVVVHLDIMNAAFSGHYVSYVKNSQNKWFKVDDSVVTPVEVERVLTKGSYMLFYARCSPKAPRSIRGKTLSPESKGKVTGKTATKTRNVSITSGPAEYISSPDGSPTLDSFYSKFHHLKRVLEDDSSSDNSSLISSNSDLGSCSTDSTHDSTTTDEFSNYIFGDSRVGWGSPWRNSESDTSSSTSSSSSPLNFRHSPLADVDRYDSVSHGSSADIDGNLYRNKMGHAERKGGVVPLSHSDTLHHRKLESTRISSNSNFRDTNSHQRLGSNHFNGISSGAPCRKPRDRTD* 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3053 1144 Coils Coil 45 65 - -
Amo17g3053 1144 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 25 1124 - -
Amo17g3053 1144 Pfam MYND finger 83 120 IPR002893 -
Amo17g3053 1144 MobiDBLite consensus disorder prediction 930 956 - -
Amo17g3053 1144 MobiDBLite consensus disorder prediction 980 1012 - -
Amo17g3053 1144 MobiDBLite consensus disorder prediction 379 411 - -
Amo17g3053 1144 ProSiteProfiles Zinc finger MYND-type profile. 83 120 IPR002893 -
Amo17g3053 1144 MobiDBLite consensus disorder prediction 200 239 - -
Amo17g3053 1144 SUPERFAMILY Cysteine proteinases 606 914 IPR038765 -
Amo17g3053 1144 MobiDBLite consensus disorder prediction 982 1012 - -
Amo17g3053 1144 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 25 1124 - -
Amo17g3053 1144 MobiDBLite consensus disorder prediction 1027 1049 - -
Amo17g3053 1144 SUPERFAMILY HIT/MYND zinc finger-like 78 123 - -
Amo17g3053 1144 ProSitePatterns Zinc finger MYND-type signature. 83 120 IPR002893 -
Amo17g3053 1144 MobiDBLite consensus disorder prediction 334 358 - -
Amo17g3053 1144 Gene3D Cysteine proteinases 601 922 - -
Amo17g3053 1144 Pfam Ubiquitin carboxyl-terminal hydrolase 608 909 IPR001394 GO:0004843|GO:0016579
Amo17g3053 1144 Coils Coil 147 167 - -
Amo17g3053 1144 MobiDBLite consensus disorder prediction 200 259 - -
Amo17g3053 1144 MobiDBLite consensus disorder prediction 1102 1144 - -
Amo17g3053 1144 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 608 912 IPR028889 -
Amo17g3053 1144 MobiDBLite consensus disorder prediction 519 542 - -
Amo17g3053 1144 MobiDBLite consensus disorder prediction 917 956 - -
Amo17g3053 1144 MobiDBLite consensus disorder prediction 1106 1131 - -
Amo17g3053 1144 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 609 624 IPR018200 GO:0004843|GO:0006511
Amo17g3053 1144 Gene3D - 72 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3053 Amo-Chr17 133861071 133867178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g3053 588 930 Miscellaneous Gene Families AT4G31670 48.696 1.96e-113 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3053 K11855 - gmx:100793079 1245.34