Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3029 ATGGAGCCTCTCCGCGCGGCGTCTCAGAGCAACAAAGAGGCTAAGCTGTGGGGTGGACGCTTCGAAGAGAGCGTCACGGAGGCCGTTGAGAGCTTCACTGAGTCGATCTCCTTCGACAAGCTTCTCTCTAAGTACGACATTATGGGAAGCAAAGCTCACGCTCAAATGCTCGCTCAACAGAGTTTGATTAGCGCGAAAGAAAGGGATGAGATTGTCAAAGGTCTTGAAGACATTGAGAGGCGCATTGCTAGTGGGGAGTTTCAGTGGAGGACGGACAGAGAGGACGTGCACATGAACATTGAGGCCGCGTTGATCGAGATGATTGGCGAGCCTGCGAAGAAGCTACACACTGCTCGGAGCAGGAACGATCAGGTCTTGACTGACTTCAGGCTGTGGTGTCGCGATGCCATTGATGGGATCATGGGGAGCATGAAGCGGCTTCAGGTGTCTCTGATTACCTTGGCTTTGAAGAATGAGGGCCTCATTGTCCCTGGTTACACACACTTGCAGCGTGCGCAGCCTGTTTTGCTGCAGCATCTTCTGCTGGCATATGTTGAACAGATTGACCGTGATATTGGTCGTCTTGTGGATTGTAGAGCTAGGATGAATTTCTGCCCCTTAGGTGCCTGTGCATTAGCCGGCACGGGGCTCCCGATTGACCGCTTCATGACTTCGGAGACCTTAGGATTTACTGCTCCCCTGAGGAATAGTATTGATGCAGTTTCTGACCGAGATTTTGTGATGGAGTTCCTTTCTGCTAATGCCATCACAGCAGTGCATCTTTCTCGGCTTGGTGAAGAATGGGTGTTGTGGGCTTCTGAGGAGTTTGGATTTATCACTCCAAGTGACTCTGTCTCTACAGGGAGTAGTATAATGCCTCAGAAAAAGAATCCAGACCCAATGGAGCTAGTCCGTGGAAAGTCTGCTAGGGTCATAGGAGATTTGGTTACTTTGCTTACATTATGCAAAGGGCTCCCTCATGCATACAATCGTGATTTGCAGGAAGACAAAGAACCAGTATTTGACAGTGTTAAAACTATTTTGGGGATGCTTGAGGTGTCAGCGGAGTTTGCACTGAACATCACCTTCAATCAGGACAGAATACAAAAGGCTTTACCTGCTGGTCATCTTGATGCAACAACACTTGCCGATTACCTTGTTAACAAGGGAGTGCCATTTAGGACCTCTCATGATATTGTTGGAAGAGCTGTTGCCTTGTGTACATCGAAGAACTGCCAACTATTGGACCTGAGTCTAGATGAGCTGAGAAGTATCAATCCAGTCTTTGATGAGCACGTTTATGAATATCTTGGAGTGGAAAATGCAATCAACAAGTTCAGCTCCTACGGTTCCACTGGGTCAGCTTGCGTTGCCAGCCAACTTGATTACTGGACCAAAAAGCTTGAAATCAAATGA 1416 0.4823 MEPLRAASQSNKEAKLWGGRFEESVTEAVESFTESISFDKLLSKYDIMGSKAHAQMLAQQSLISAKERDEIVKGLEDIERRIASGEFQWRTDREDVHMNIEAALIEMIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDGIMGSMKRLQVSLITLALKNEGLIVPGYTHLQRAQPVLLQHLLLAYVEQIDRDIGRLVDCRARMNFCPLGACALAGTGLPIDRFMTSETLGFTAPLRNSIDAVSDRDFVMEFLSANAITAVHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPHAYNRDLQEDKEPVFDSVKTILGMLEVSAEFALNITFNQDRIQKALPAGHLDATTLADYLVNKGVPFRTSHDIVGRAVALCTSKNCQLLDLSLDELRSINPVFDEHVYEYLGVENAINKFSSYGSTGSACVASQLDYWTKKLEIK* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3029 471 Pfam Lyase 19 313 IPR022761 -
Amo17g3029 471 PRINTS Argininosuccinate lyase family signature 114 136 - -
Amo17g3029 471 PRINTS Argininosuccinate lyase family signature 206 222 - -
Amo17g3029 471 PRINTS Argininosuccinate lyase family signature 244 268 - -
Amo17g3029 471 PRINTS Argininosuccinate lyase family signature 323 342 - -
Amo17g3029 471 PRINTS Argininosuccinate lyase family signature 288 304 - -
Amo17g3029 471 PRINTS Argininosuccinate lyase family signature 155 175 - -
Amo17g3029 471 Hamap Argininosuccinate lyase [argH]. 15 466 IPR009049 GO:0004056|GO:0042450
Amo17g3029 471 PRINTS Fumarate lyase superfamily signature 115 133 IPR000362 -
Amo17g3029 471 PRINTS Fumarate lyase superfamily signature 288 304 IPR000362 -
Amo17g3029 471 PRINTS Fumarate lyase superfamily signature 244 271 IPR000362 -
Amo17g3029 471 PRINTS Fumarate lyase superfamily signature 160 178 IPR000362 -
Amo17g3029 471 TIGRFAM argH: argininosuccinate lyase 16 466 IPR009049 GO:0004056|GO:0042450
Amo17g3029 471 Gene3D - 35 242 IPR024083 -
Amo17g3029 471 CDD Argininosuccinate_lyase 35 468 IPR009049 GO:0004056|GO:0042450
Amo17g3029 471 ProSitePatterns Fumarate lyases signature. 288 297 IPR020557 GO:0003824
Amo17g3029 471 Pfam Argininosuccinate lyase C-terminal 378 443 IPR029419 -
Amo17g3029 471 PANTHER ARGININOSUCCINATE LYASE 42 470 - -
Amo17g3029 471 Gene3D - 373 445 - -
Amo17g3029 471 PANTHER ARGININOSUCCINATE LYASE 42 470 IPR009049 GO:0004056|GO:0042450
Amo17g3029 471 Gene3D Fumarase/aspartase (Central domain) 132 461 - -
Amo17g3029 471 SUPERFAMILY L-aspartase-like 16 468 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3029 Amo-Chr17 133363926 133366362 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3029 K01755 - gmx:100796544 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3029 17 133363926 133366362 Amo17g3029 17 133363926 133366362 ECH