LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo17g3011	ATGCCCACTATGCCCACTAATGAAGACTTCCAAGGTGTTTCGAATTGCTATGTGTTCAAGAGCAGATTGCAGGAGTATGCACAGAAGGTGGGGCTTCCAACACCTGTATATGAAACTATCAAGGAAGGGCCTTCTCATGAACCCTCCTTCAGGTCCACAGTGATAGTCAATGATGTCAGGTATGACTCTCTCGCCGGCTTCTTCAACCGCAAAGCGGCGGAGCAGTCAGCTGCTGAGGTTGCTTTGATGGAGCTGGCCAAGACTAATGAAGTTAACCAATCCATTAAACAACCTGTTCATGAAACTGGATTGTGCAAGAACTTACTTCAGGAGTATGCGCAGAAGATGAATTATGCAATGCCCATGTATCACAGCCAAAAGGATGAAACACCAAGTCGAGCACCCAGATTTACATGTACCGTTGACATTGGCGGTATTCTCTATATTGGGGGAGCGGCAAAAACAAAGAAAGAAGCAGAAATAAAAGCAGCTAGAACTGCTCTGCTAGCTATCCAATCAAGTGCATCTTCTTCCCAAAACCAGTTGGGTCATTCACAGTTGACAGTAATTCCATGCCGGAAACGGGCAGCAGAAACTGCTCCCCCTGTTGATGAGACTTCGAAACCCTCAAAGCCAAAGAAGCGATTTAGGAAGAAATCTTCAAAAAGGAAATTCTCTAAAGACAAGACTGGCCGTAATGCTGAAAATGCAGGCACTGGAGCAAATATTAATCCTGGGGTAGAGTCACATGCAAATATCAGCAATGAGTCTGGCTTCAAGGAAACAAAATGTGATGGAGCATTCATTTCAGAAGCCATGAAGAGTTCTGAGAATGGGATATTGCTTAATTATTGCGAGAAAGAAGTATTGGTTAAGGAAGGTTCTCCGGTGATGAATGGCAATGGATCTGTTGAAATTGGGAACTCAACAAAATTGCATTCCAAAGATCCAGAAGCTAGTGTGGAGCTGAACAAGCAGCAAGATAATGGAGAAATCATAAACGAACTGTGA	1011	0.4382	MPTMPTNEDFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLAGFFNRKAAEQSAAEVALMELAKTNEVNQSIKQPVHETGLCKNLLQEYAQKMNYAMPMYHSQKDETPSRAPRFTCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASSSQNQLGHSQLTVIPCRKRAAETAPPVDETSKPSKPKKRFRKKSSKRKFSKDKTGRNAENAGTGANINPGVESHANISNESGFKETKCDGAFISEAMKSSENGILLNYCEKEVLVKEGSPVMNGNGSVEIGNSTKLHSKDPEASVELNKQQDNGEIINEL*	337

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo17g3011	336	SUPERFAMILY	dsRNA-binding domain-like	17	94	-	-
	Amo17g3011	336	SMART	DRBM_3	105	172	IPR014720	-
	Amo17g3011	336	SMART	DRBM_3	19	86	IPR014720	-
	Amo17g3011	336	PANTHER	DOUBLE-STRANDED RNA-BINDING PROTEIN 1	4	301	IPR031147	GO:0003725
	Amo17g3011	336	PANTHER	RIBONUCLEASE III	4	301	IPR011907	GO:0003723\|GO:0004525\|GO:0006364
	Amo17g3011	336	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	18	87	IPR014720	-
	Amo17g3011	336	MobiDBLite	consensus disorder prediction	299	336	-	-
	Amo17g3011	336	Gene3D	-	101	173	-	-
	Amo17g3011	336	Pfam	Double-stranded RNA binding motif	106	169	IPR014720	-
	Amo17g3011	336	Pfam	Double-stranded RNA binding motif	20	84	IPR014720	-
	Amo17g3011	336	CDD	DSRM_AtDRB-like_rpt1	18	86	IPR044450	GO:0003725
	Amo17g3011	336	MobiDBLite	consensus disorder prediction	232	254	-	-
	Amo17g3011	336	MobiDBLite	consensus disorder prediction	212	226	-	-
	Amo17g3011	336	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	104	173	IPR014720	-
	Amo17g3011	336	MobiDBLite	consensus disorder prediction	196	254	-	-
	Amo17g3011	336	SUPERFAMILY	dsRNA-binding domain-like	106	173	-	-
	Amo17g3011	336	Gene3D	-	19	100	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo17g3011	Amo-Chr17	133156771	133161027	Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo17g3011	-		-	gmx:100782651	414.846

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo17g3011	17	133156771	133161027	Amo17g3011	17	133156771	133161027	ECH