Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g3007 ATGCTGTTTAATGTTTCACCAATAATGAGTCAGGCATTGGAGAAGAATTCCTTTGAGGCGGCTGTAATTGGTGGAACTCAGTTATGTTCACGACGCTTGCTGCAGCAAATAATATATTGTGTCGGTGGCGTATCTGTGCTTTTCCCGCTTATCGCCCAGACACAGTGTAGTAAATTTGAAATTGAAAAGGTGGGAGAATATGAAAAGACATTAGTAGCACAGACAATGAGGGAATATATGATGACCGAGGTTATTGAGCTGATTGCTTCTCTTATAGATGAGAACTTAGCAAATCAACAACAGATGTATCTTGTGTCTGGATTTTCTGTCCTGGGATTCTTGTTACAATCAGTTCCTCCACGAGAACTTAATATGGAGACTCTTTCTGCATTGAAGCATCTTTTTAATGTTGTTTCTAACTCTGAATTGCTTGTGAAGGAGGCTATTTCTAGCATATTTCTTAATCCTCTTATCTGGGTCTATGCAATTTACAAGGTGCAACGAGAACTATACATGTTTCTGATTCAACAATTTGATAGCGATCCTCGATTACTGAGGAGTTTGTGCCGGCTTCCACGTGTTCTTGACATAATTCACCAATTCTATTGTGATAATGTCAAGTCTCGATTCCTTCCTGGAAGTAACCCTGATCAACATCCTGTTAGCAAAGGAAATACTGAGCAGAGACCTGGTGTAGAAGAAATACATAAGATCCGTCTTCTTTTGTTAAGTCTTGGTGAAATGAGTCTCAGGCAGAACATTGCTGCAGGCGACATAAAAGCTCTTATAGCTTTTTTTGAGACAAGTCAAGATATGACTTGTATTGAAGATGTCTTGCACATGGTTATTCGTGCTGTTTCCCAGAAACCATTGCTTGCTTCTTTTCTCGAGCAAGTTAATATCATTGGTGGTAGTCAGGTTTTTGTCAATCTTCTCCAGCGAGAATCTGAATCCATCAGGTTACTGAGCTTACAGTTCATAGGAAGGCTTTTAGTTGGCCTACCATCTGAGAAGAAGGGAACAAGATTTTTCAACCTCCCAATGGGAAGACCTAGATCTCTTTCTGAAGGCCAAAGGAAAAACAGAATGCAACCAATTTTCCTAGCTATATCTGATAGACTGTTCTACTTTCCACAGACTGATAATCTCTGTGCCACGTTATTTGATGTTCTTCTTGGTGGTGCTAGCCCCAAGCAGGTTTTACAAAGGAACAACCAATTTGAGAGGGTCAGAAGCAAGGGCATTACTACCCATTTTTTACTTCCTCAAATGTTGCCACTGATTTTCAGATATCTGTCTGGCTGCGAAGATGGACTTGCAAAAATTAAAATTATCAGAGATCTACTTGATCTTCTTGATTCAAATCCTTCCAATATTGAAGCTTTTATGGAATATGGGTGGAATGCATGGCTTTCATGTTCTCTAAAGCTTGATATTTTAAAAGACCACAATGTCCAGTCACTTGATCAAAGTGAAAATAGCATGGATCAGCTGCTATTGGTGAGGAACTTGTTTTCTCTAGTTCTCTGTCACTATTTGCATTCTGTAAAAGGTGGTTGGCAACAATTGGAAGAGACAGTCAATTTCCTTATCATGCACTCTGAAGATGGCAATTCTTGTCCAAATTTTCTTCGTGATATGTATGATGATATTATTCAGAATATGGTGGAGCTTTCAGCTGTGGATAATATTTTCATTTCACAACCCTGTCGAGATAATACGTTGTATTTGCTGAGACTAATTGATGACATGCTGATATCTGAGATTGACAAAGAACTCCCGTTCTTTGGAAGTGACTCTGAATTTCACCTTAACTTGGAAATGGAATCTCACAAAGAGTACAACTCCGCTTTAAAAGAAGTGCTAATAGGAGAGGCTGACGAACAAACATCAAGAAAATCAAAGAATTTCAAGCCGCCAATGACAAATGATGATTCGATTGCAGAGAAATGGTGGAATCTATATGACAAATTGTGGGTTGTTATTAGCAAGATGAATAATAAAGGACCTAGCAACATGTTACCCAAAGCTTCATCGTTTGCAGGACCATCCCTTAGTCAAAGGGCACGTGGATTAGTTGAGTCATTAAACATTCCGGCTGCTGAAGTGGCTGCTGTTGTTGTATCAGGAGGAATTGGCAGTGCTTTGAGTGTAAAACCTAACAAAAATGTTGATAAAGCTATGGTTTTACGGGCAGAAAGGTGCCCTAGAATTATTTATCGCCTTGTTATCCTGTACCTTTGTAGAGCTTCCTTAGAAAGGGCATCCCGGTGTGTCCAACAGTTCACATCACTTTTACCTTCCCTTTTAACTGCTGATGATGAACAAAGCAAGAGTAGGCTTCAACTTGTTATTTGGTCACTGCTTGCAGTTAGGGCACAGTATGGAATGTTGGATGATGGTGCTCGTATTCATCTCCTATCTCATCTGATACGAGAGACTGTCAATATTGGAAAATCGATGCTTGCTACTAGCATTGTGAGCAGGGATGACACCATGGATTCAAGCCATAACTCAAAAGATGCAGGATCCATACAAAATTTGATTCAAAAGGATCGTGTTCTTGCAGCAGTCAGTGATGAAGCTAAATACATGAAGACATCAAAGACTGACCGCGACCAGCAGATACAGGAACTCCATTCTAGACTAGATGAAAACTCATTGGCTGAATCTAGTAACAAGAAAGTTATTGAAGATGAGATACAAAATAGCTTGAACACTGTTCTAGCTTCGGATGAAAGCAGAAGAACGGAATTCCAGCTTACTTATGAGGAGGAGCAGCAGAATGTAGCTGAAAAATGGATACACATGTTTCGTTCATTGATTGATGAGAGAGGCCCTTGGTCTACCAACCCCTTTCCAAACCATGCTGTCAAACGCTGGAAACTGGACAAGACGGAAGATACATGGCGTCGTAGGCCCAAACTTCGACAAAATTACCATTTTGATGAAAATCTGTGTAATCCTCTTTCAATCACTTCTGCCGAGGTTGCTAGTCCAGTCAATGATAGTAATCCTGGTGTTATGGCAAACATATCGGAGCAAATGAAGGAATTATTGCTGAAAGGGATAAGGAAAATAACTGACGAGGGGTCCTTGGATGGTAATGAAACCAATACTGAAGTAGGTGGACAGAAGACACCGATTCTCTCTGATAATCCAGATTGTCAATCCTCTGACATACTTAAGGAGAGCAGTGACAGAAAGGATACTGGCCAAGATCGTAAAGACATTTCCTCTTCGTCTGATACAGAAGCTAGTGAGGTGCTGGTGTCAGTTCCATGTGTTCTTGTGACCCCAAAGAGGAAATTAGCTGGTCATTTGGCTATCATGAAAAATGTTTTGCATTTTTCTTCTCAATTCTTGGTTGAAGGTACCGGTGGGTCATCTGTTTTCAGAAACTTTGATGCATCAACTAGTTCTGATGGGACCAAGTCTGATCAAAAGAAGTGGCCTGCTTCTGATATGGAACTCCAGAAGGGAATTACAGTTGGCAATGTAGAGGTTATAAATGGGAATGGTTCTTCTAAACTTATGAGATGTGTTAAACGCCATCGAAGATGGAGCATGGCCAAGATAAAAGCTGTTCATTGGACTCGGTATTTGCTAAGATATACTGCCATAGAGATCTTCTTCAGCAATTCAGCTGCCCCAGTTTTTCTAAATTTTGCATCTTTGAAGGACGCAAAAGATATTGGGAACTTGATAGTTAATTCAAGAAATGACTATTTATTTCCCAAAGGAAATGGAAAGAGTGGTTCTATTAATTTTGTTGATCGCCGAATGGCACAGGAGATGGCAGAAACTGCCAGAGAGAGCTGGAGGAGAAGGGAAATAACAAACTTTGAATATTTGATGATTCTCAACACACTAGCTGGAAGATCTTATAATGATTTAACCCAGTATCCTGTTTTCCCTTGGGTCTTGGCCGATTACTCGTCTGAGCTTCTTGATTATAACAAGTCATCTACATTTCGGGATCTCTCAAAGCCTGTTGGAGCACTCGATAATAAACGATTTGAGGTGTTTGAAGACAGATACCGTAACTTCTGTGATCCTGATATACCCAGTTTCTACTATGGATCTCATTACTCAAGTATGGGCATAGTGCTTTATTACCTTCTTAGATTAGAACCCTTCACATCTCTTCACCGTAATCTACAGGGTGGTAAATTTGATCATGCTGACCGTCTTTTTCAAAGCATTGAGGGCACATACAGAAATTGCCTTACAAATACTAGTGACGTGAAGGAGTTAATACCTGAGTTCTTCTACATGCCTGAGTTTCTTGTCAATTCAAACTCGTATCATCTAGGAGTTAAACAGGATGGTGAACCTATAGCGGATATTTGCCTCCCTCCCTGGGCAAAGGGTTCACCTGAAGAATTCATTAGGAGAAACCGGGAGGCACTTGAAAGTGAATATGTTAGTTCAAATCTCCATCAATGGATAGATTTAGTATTTGGTTACAAGCAACGAGGAAAACCTGCTGTGGAGGCAGCAAACATCTTCTACTACTTAACTTATGAAGGTGCTGTTGATTTGGAAACAATGGAAGATGATCTGCAAAGAGCAGCCATAGAAGACCAGATAGCCAACTTTGGTCAGACTCCCATCCAGATATTTCGGAAGAAACACCCAAGAAGAGGGCCACCTATTCCGATTGCACACCCTTTACGCTTTGCACCTGATTCTATCAGTTTGACTTCCATCGTTTCTAATACTAGTCACCCGGCATCTGCTGTATTGTATGTTGGTCTTATGGAATCCAATATCGTTCTTGTAAATGACGGCCTCATCTTGTCTGTTAAGATGTGGTTGACAACACAGCTGCAATCTGGTGGAAATTTTACATTCTCCGGTTCCCAGGATCCATTCTTTGGAGTTGGATACGACATACTTTCTCCACGAAAAATCGGGATTCCCGTGCCTGAAAATGTTGAACTTGGAGCACAATGCTTTGTAACAATGCAGACATCCTCCGAGAACTTTTTAGTATCATGTGGCAATTGGGAAAATAGTTTTCAGGTCATATCATTAAGTGATGGCAGAATGGTACAGAGCATTCGACAGCATAAAGATGTGGTGAGCTGTGTTGCAGTGACATCTGATGGAAGTATCCTTGCAACTGGAAGCTATGATACAACAGTGATGGTTTGGGAAGTTTTTCGTGGTAAAGCCACAGAAAAGAGGATTCGTAACAATCAGCCTGAATTGCCTCGTAAAAACTATGTAATAGTTGAAACTCCATGTCATATTCTTTGTGGACATGATGATATTATAACTTGCTTACATGTTAGTCATGAGCTTGATATTGTAATTAGTGGGTCAAAAGATGGAACTTGCATTTTCCATACTCTGCGAGAAGGTAGATATGTAAGATCCTTACGGCATCCATCGGGCAGTCCAATATCAAAGCTAGTTGTTTCTCAGCGCGGTCATATTGTGATTTATGCTGATGATGATCTTAGTCTGCATCTGTATTCAATTAATGGGAAACATCTTGCTGCCACGGAATCTAATGGACGCCTGAATGCTATTCAATTGAGCAGATGTGGTGAGTTTTTGGTAGGTGCAGGTGATCAAGGACAGATTGTTGTTCGCTCTATGGACACCCTCGAAATTGTTAAGAAATATCAGGGAATTGGAAGGGCTATAACATCTCTAGCAGTAACGCCAGAAGAATGCTTCTTGGCCGGCACAAAAGATGGAAGCCTCCTTGTGTATTCAATAGAAAATCCTCAACTTCGGAAAACTAACCAAAACAGAAATGTGAGATCAAAGCTTACTTAA 5793 0.4038 MLFNVSPIMSQALEKNSFEAAVIGGTQLCSRRLLQQIIYCVGGVSVLFPLIAQTQCSKFEIEKVGEYEKTLVAQTMREYMMTEVIELIASLIDENLANQQQMYLVSGFSVLGFLLQSVPPRELNMETLSALKHLFNVVSNSELLVKEAISSIFLNPLIWVYAIYKVQRELYMFLIQQFDSDPRLLRSLCRLPRVLDIIHQFYCDNVKSRFLPGSNPDQHPVSKGNTEQRPGVEEIHKIRLLLLSLGEMSLRQNIAAGDIKALIAFFETSQDMTCIEDVLHMVIRAVSQKPLLASFLEQVNIIGGSQVFVNLLQRESESIRLLSLQFIGRLLVGLPSEKKGTRFFNLPMGRPRSLSEGQRKNRMQPIFLAISDRLFYFPQTDNLCATLFDVLLGGASPKQVLQRNNQFERVRSKGITTHFLLPQMLPLIFRYLSGCEDGLAKIKIIRDLLDLLDSNPSNIEAFMEYGWNAWLSCSLKLDILKDHNVQSLDQSENSMDQLLLVRNLFSLVLCHYLHSVKGGWQQLEETVNFLIMHSEDGNSCPNFLRDMYDDIIQNMVELSAVDNIFISQPCRDNTLYLLRLIDDMLISEIDKELPFFGSDSEFHLNLEMESHKEYNSALKEVLIGEADEQTSRKSKNFKPPMTNDDSIAEKWWNLYDKLWVVISKMNNKGPSNMLPKASSFAGPSLSQRARGLVESLNIPAAEVAAVVVSGGIGSALSVKPNKNVDKAMVLRAERCPRIIYRLVILYLCRASLERASRCVQQFTSLLPSLLTADDEQSKSRLQLVIWSLLAVRAQYGMLDDGARIHLLSHLIRETVNIGKSMLATSIVSRDDTMDSSHNSKDAGSIQNLIQKDRVLAAVSDEAKYMKTSKTDRDQQIQELHSRLDENSLAESSNKKVIEDEIQNSLNTVLASDESRRTEFQLTYEEEQQNVAEKWIHMFRSLIDERGPWSTNPFPNHAVKRWKLDKTEDTWRRRPKLRQNYHFDENLCNPLSITSAEVASPVNDSNPGVMANISEQMKELLLKGIRKITDEGSLDGNETNTEVGGQKTPILSDNPDCQSSDILKESSDRKDTGQDRKDISSSSDTEASEVLVSVPCVLVTPKRKLAGHLAIMKNVLHFSSQFLVEGTGGSSVFRNFDASTSSDGTKSDQKKWPASDMELQKGITVGNVEVINGNGSSKLMRCVKRHRRWSMAKIKAVHWTRYLLRYTAIEIFFSNSAAPVFLNFASLKDAKDIGNLIVNSRNDYLFPKGNGKSGSINFVDRRMAQEMAETARESWRRREITNFEYLMILNTLAGRSYNDLTQYPVFPWVLADYSSELLDYNKSSTFRDLSKPVGALDNKRFEVFEDRYRNFCDPDIPSFYYGSHYSSMGIVLYYLLRLEPFTSLHRNLQGGKFDHADRLFQSIEGTYRNCLTNTSDVKELIPEFFYMPEFLVNSNSYHLGVKQDGEPIADICLPPWAKGSPEEFIRRNREALESEYVSSNLHQWIDLVFGYKQRGKPAVEAANIFYYLTYEGAVDLETMEDDLQRAAIEDQIANFGQTPIQIFRKKHPRRGPPIPIAHPLRFAPDSISLTSIVSNTSHPASAVLYVGLMESNIVLVNDGLILSVKMWLTTQLQSGGNFTFSGSQDPFFGVGYDILSPRKIGIPVPENVELGAQCFVTMQTSSENFLVSCGNWENSFQVISLSDGRMVQSIRQHKDVVSCVAVTSDGSILATGSYDTTVMVWEVFRGKATEKRIRNNQPELPRKNYVIVETPCHILCGHDDIITCLHVSHELDIVISGSKDGTCIFHTLREGRYVRSLRHPSGSPISKLVVSQRGHIVIYADDDLSLHLYSINGKHLAATESNGRLNAIQLSRCGEFLVGAGDQGQIVVRSMDTLEIVKKYQGIGRAITSLAVTPEECFLAGTKDGSLLVYSIENPQLRKTNQNRNVRSKLT* 1931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g3007 1930 Pfam PH domain associated with Beige/BEACH 1095 1236 IPR023362 -
Amo17g3007 1930 SUPERFAMILY ARM repeat 82 491 IPR016024 -
Amo17g3007 1930 Pfam Beige/BEACH domain 1273 1549 IPR000409 -
Amo17g3007 1930 CDD Beach 1274 1549 IPR000409 -
Amo17g3007 1930 MobiDBLite consensus disorder prediction 1061 1082 - -
Amo17g3007 1930 SUPERFAMILY BEACH domain 1266 1549 IPR036372 -
Amo17g3007 1930 ProSiteProfiles Trp-Asp (WD) repeats profile. 1689 1730 IPR001680 GO:0005515
Amo17g3007 1930 Gene3D - 1087 1235 IPR011993 -
Amo17g3007 1930 ProSiteProfiles BEACH domain profile. 1259 1549 IPR000409 -
Amo17g3007 1930 SMART Beach_2 1271 1549 IPR000409 -
Amo17g3007 1930 MobiDBLite consensus disorder prediction 1030 1084 - -
Amo17g3007 1930 SUPERFAMILY WD40 repeat-like 1661 1920 IPR036322 GO:0005515
Amo17g3007 1930 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1689 1722 - -
Amo17g3007 1930 SUPERFAMILY PH domain-like 1088 1238 - -
Amo17g3007 1930 ProSitePatterns Trp-Asp (WD) repeats signature. 1708 1722 IPR019775 -
Amo17g3007 1930 SMART WD40_4 1789 1829 IPR001680 GO:0005515
Amo17g3007 1930 SMART WD40_4 1747 1786 IPR001680 GO:0005515
Amo17g3007 1930 SMART WD40_4 1682 1721 IPR001680 GO:0005515
Amo17g3007 1930 SMART WD40_4 1831 1869 IPR001680 GO:0005515
Amo17g3007 1930 SMART WD40_4 1872 1910 IPR001680 GO:0005515
Amo17g3007 1930 ProSiteProfiles BEACH-type PH domain profile. 1084 1237 IPR023362 -
Amo17g3007 1930 PANTHER BEIGE/BEACH-RELATED 2 1923 - -
Amo17g3007 1930 PANTHER OS06G0678651 PROTEIN 2 1923 - -
Amo17g3007 1930 Pfam Neurobeachin/BDCP, DUF4704 alpha solenoid region 14 531 IPR031570 -
Amo17g3007 1930 Pfam Neurobeachin beta propeller domain 1570 1919 IPR046851 -
Amo17g3007 1930 Gene3D - 1602 1927 IPR015943 GO:0005515
Amo17g3007 1930 MobiDBLite consensus disorder prediction 1033 1060 - -
Amo17g3007 1930 Gene3D BEACH domain 1262 1549 IPR036372 -
Amo17g3007 1930 CDD PH_BEACH 1089 1240 IPR023362 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g3007 Amo-Chr17 133068405 133086187 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g3007 - - adu:107461023 3684.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g3007 17 133068405 133086187 Amo17g3007 17 133068405 133086187 ECH