Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2965 ATGTCTGCTTCAACAGCTCTCTCAGCCTCCAAGTTGGAGACTTTACTGCCTTCAATGCCATCACCATCATCATTCTCATCGATTTCTACCACCAATTTATCGGTAATTTGCAAGAACAGAAGTACCTCTCTTCAGAGAGGAGTGATTCGCTGCGACGCGGTCGCACCTGATGCATTTGTGAAGATCAATAATGGTGCGAGCGATGCTGGCAGTAGCAGTGGCACCCTCTCTGCTCTCGAGCAGCTCAAGACTTCTTCTGTTGATAGGTATACAAAGGAAAGGAGCAGCATTGTGGTTATTGGGCTCAGTGTGCACACTGCACCCGTGGAAATGCGTGAAAAACTTGCCATTCCAGAAGCAGAATGGCCTAGAGCCATCACAGAGCTATGTAGTCTAAATCATATTGAAGAAGCAGCTATTTTGAGCACCTGCAATCGAATGGAGATATATGTTGTTGCTTTGTCCCAACACCGAGGTGTCAAAGAAGTCATGGAATGGATGTCTAAAAAAAGCTCGATTCCTGTTTCAGAGCTTCGCCAACATAGGTTTTTGCTTTACAACAAAGATGCGACACAACATCTTTTTGAAGTTTCAGCTGGTCTTGACTCTCTTGTATTGGGAGAAGGTCAAATCCTTGCTCAGGTTAAGCAAGTTGTCAAAGTTGGACAAGGAGTTAATGGCTTTGGGAGAAATATTAGTGGGCTATTCAAACATGCAATTGCTGTTGGAAAGAGGGTTAGAACTGAGACCAATATTGCTGCTGGAGCCGTTTCTGTAAGCTCGGCTGCTGTTGAACTAGCATTTTTGAAGCTACCACAGGCCTCACATGCTAATGCAAGGATGTTGGTTATTGGTGCTGGTAAGATGGGAAAGCTTGTAATAAAACATTTGGTTTCGAAAGGTTGCACAAAGATGGTTGTTGTCAATAGAACTGAGGAGAGGGTGGCTGCAATACGTGAAGAATTGGATGGTGTTGAGATAATATACAAATCCCTATCTGAAATGCTCACCTCTGCTGGCGAAGCAGATGTTGTTTTCACCAGCACATCATCAGAAAACCCATTATTCTTAAAAGATCATGTTGTGGACCTTCCTCCAGCAAGTAAAGATGTTGGAGGCCGACGCCTTTTCATAGATATTTCTGTTCCTAGAAATGTGGGTCCATGTGTCTCAGATCTTGAGTCTGTACGAGTTTATAACGTCGATGACCTCAAAGAGGTTGTGGCTGCCAATAAGGAGGATAGAATAAAAAAAGCAATGGAAGCTCAGACAATCATTGCAGAAGAATCAAAACAATTCGAGGCCTGGTTGGACTCACTAGAAACTGTCCCCACCATTAAGAAATTGAGGGCTTACGCCGAAAGAATCAGGCTTGCCGAGCTTGAGAAATGCTTAGGTAAGTTGGGTGATGACATCCCAAAGAAGACACGGAGAGCTGTCGACGATCTTAGCCGAGGCATAGTGAATAAGTTGCTTCATGGTCCAATGCAGCACTTGAGGTGTGATGGGAATGACAACCGGACTCTAAGTGAAACCCTGGAGAACATGCATGCCTTGAACAGAATGTTTGATCTGGACACTGAAATTTCTGTTTTGGAGCAAAAAATTCGAATAAAGATGGAACAAAACCAGAAGTGA 1638 0.4383 MSASTALSASKLETLLPSMPSPSSFSSISTTNLSVICKNRSTSLQRGVIRCDAVAPDAFVKINNGASDAGSSSGTLSALEQLKTSSVDRYTKERSSIVVIGLSVHTAPVEMREKLAIPEAEWPRAITELCSLNHIEEAAILSTCNRMEIYVVALSQHRGVKEVMEWMSKKSSIPVSELRQHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAIAVGKRVRTETNIAAGAVSVSSAAVELAFLKLPQASHANARMLVIGAGKMGKLVIKHLVSKGCTKMVVVNRTEERVAAIREELDGVEIIYKSLSEMLTSAGEADVVFTSTSSENPLFLKDHVVDLPPASKDVGGRRLFIDISVPRNVGPCVSDLESVRVYNVDDLKEVVAANKEDRIKKAMEAQTIIAEESKQFEAWLDSLETVPTIKKLRAYAERIRLAELEKCLGKLGDDIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGNDNRTLSETLENMHALNRMFDLDTEISVLEQKIRIKMEQNQK* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2965 545 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 255 415 IPR036291 -
Amo17g2965 545 CDD NAD_bind_Glutamyl_tRNA_reduct 97 419 - -
Amo17g2965 545 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 419 508 IPR036453 GO:0008883|GO:0033014|GO:0050661
Amo17g2965 545 Hamap Glutamyl-tRNA reductase [hemA]. 96 523 IPR000343 GO:0008883|GO:0033014|GO:0050661
Amo17g2965 545 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 100 250 IPR015895 GO:0008883|GO:0033014|GO:0050661
Amo17g2965 545 Pfam Shikimate / quinate 5-dehydrogenase 275 407 IPR006151 -
Amo17g2965 545 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 96 252 IPR036343 GO:0008883|GO:0033014|GO:0050661
Amo17g2965 545 ProSitePatterns Glutamyl-tRNA reductase signature. 193 216 IPR018214 GO:0008883
Amo17g2965 545 PANTHER GLUTAMYL-TRNA REDUCTASE 1 545 - -
Amo17g2965 545 Gene3D - 95 255 IPR036343 GO:0008883|GO:0033014|GO:0050661
Amo17g2965 545 TIGRFAM hemA: glutamyl-tRNA reductase 97 507 IPR000343 GO:0008883|GO:0033014|GO:0050661
Amo17g2965 545 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 421 525 IPR015896 GO:0008883|GO:0033014|GO:0050661
Amo17g2965 545 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 545 - -
Amo17g2965 545 Gene3D - 256 408 - -
Amo17g2965 545 Coils Coil 308 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2965 Amo-Chr17 132076050 132079408 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2965 K02492 - gmx:100782247 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2965 17 132076050 132079408 Amo07g1935 07 57954007 57957361 hybridization