Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2890 ATGTCATCGTGGCTAGCTCGGTCCCTAACAAACTCCCTCCGAATCGATGACAACGACGTCGTAGCGGACCCTCCAGCTGTTTCTCCCACAAGCCAACCACATGAACATCATGATAATGCGCATGGATCGGAACCAGAAGACGACGAAGACGAAGAGGATCAAGGCCAAGGCCGTGGAGTCAAAGAGGATCTTGATGAAATCAAACAAACCCTAACTCGTCAATTCTGGGGAATGGCTAGTTTCCTCGCTCCTCCTCCACCTTCCAATTCCAACCCTTCATCTCCCCCTTCTCACGACCTCTACCAAGACTCTATTCCCGATCATTCTCGGCCCGATTATTCCGACGTCGACCAACCTGATCCTGAACCCATCGGATCCGATTTCGGAGGGAACCACCAACCTGAATTGGAGGAATACGCTCCTGAACGCGCCGTTGGGATCACCGACGAGGTTTTGTCCTTCGCCTTCAATATCGCTATGCATCCCGAGACCTGGCTCGATTTTCCTATTGATGAGGAAGACGATCCTCAAGATTTTGACATGTCCGATGCACAACAAGAGCATGCGGTGGCAATTGAGAGACTTATTCCTAGATTGAATGCACTCAGAATTGAACTGTGTCCTTGCCATATGAGTGAAAGTTACTTCTGGAAAGTCTATTTTGTGCTTTTGCATTCAAGGCTTAATAAAGAAGATGCTTCCATTTTGTCTACACCGCAGGTGATGGAAGCCAGGGCAATGTGGATGCAGGAGCTGCACAAACAAACAAAGCCTGAATTTGAGTTTTCCAGAATAAGAACTATGTACTCAAAAGGCCCTGTTCGGCATGATGATTTTGCCTGCAGCTTAGTAGATGATGCCTATTCTGATGACCTTTCTCATCAAACATATGGATATGAAACAACATCTTTATCCATGCTAGCAGATAAAGAGATAGAGAAGCACACGATTGCAGTTGAAAGTTCTGAAACACATTTCATTGACAAGTCTGTAATTCAGGAAAATACAATSATTAAAAATGAGAACAAGGATCTAAAATGTGGRCATTCCACTCAAATTATTACTCAGGACTATGTTAATGATGATGATGATATTGATTGGCCAGAGGAAGATTCTGATTTAGGAGAACCAATTATTTCCATCGTGAATGAAGAAGACATATCTTTTAGTGATCTMGAAGATGACGATTATGGCATTAAGCCTATTACTTGTAATACAGGTTCAAAGGTGGCATAA 1236 0.4369 MSSWLARSLTNSLRIDDNDVVADPPAVSPTSQPHEHHDNAHGSEPEDDEDEEDQGQGRGVKEDLDEIKQTLTRQFWGMASFLAPPPPSNSNPSSPPSHDLYQDSIPDHSRPDYSDVDQPDPEPIGSDFGGNHQPELEEYAPERAVGITDEVLSFAFNIAMHPETWLDFPIDEEDDPQDFDMSDAQQEHAVAIERLIPRLNALRIELCPCHMSESYFWKVYFVLLHSRLNKEDASILSTPQVMEARAMWMQELHKQTKPEFEFSRIRTMYSKGPVRHDDFACSLVDDAYSDDLSHQTYGYETTSLSMLADKEIEKHTIAVESSETHFIDKSVIQENTXIKNENKDLKCGHSTQIITQDYVNDDDDIDWPEEDSDLGEPIISIVNEEDISFSDLEDDDYGIKPITCNTGSKVA* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2890 411 MobiDBLite consensus disorder prediction 103 117 - -
Amo17g2890 411 MobiDBLite consensus disorder prediction 54 69 - -
Amo17g2890 411 MobiDBLite consensus disorder prediction 1 143 - -
Amo17g2890 411 MobiDBLite consensus disorder prediction 1 15 - -
Amo17g2890 411 Pfam BSD domain 177 232 IPR005607 -
Amo17g2890 411 SMART wurzfinal6 176 228 IPR005607 -
Amo17g2890 411 PANTHER BSD DOMAIN-CONTAINING PROTEIN 3 409 - -
Amo17g2890 411 ProSiteProfiles BSD domain profile. 183 228 IPR005607 -
Amo17g2890 411 SUPERFAMILY BSD domain-like 146 232 IPR035925 -
Amo17g2890 411 Gene3D BSD domain 146 238 IPR035925 -
Amo17g2890 411 PANTHER BSD DOMAIN-CONTAINING PROTEIN 3 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2890 Amo-Chr17 131038989 131042188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2890 146 226 EF-hand Containing Proteins AT1G69030 31.868 6.73e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2890 - - gmx:100794286 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2890 17 131038989 131042188 Amo17g2890 17 131038989 131042188 ECH
Amo08g0850 08 14686166 14689384 Amo17g2890 17 131038989 131042188 hybridization