Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2884 AGACAGCGTGCCTTCGTCGCCAAAAATGGTCTCTGCAGTTCGGCTCTCTTCTCGACGTCGCGAAGGTCTGCTCGGGCCGGAACTCTTCTCCTTGCCGTCGCGTCTCTCTCTTCAAGCTCTCTCTCTTCGAGCTCATTCTGTGTCACTCTCACCGCGAACGCCTCTCCTCATGGTCACTTCTGTTCCACTTTGGCCGTCTTCCCTTCTCCGGTAAGCACTCCTCTAGACCTCCACTGCTTCTTCACTCTTCAAACCGAACGGCTGAACCCACCTTCCAAAACGGCAGCCACCTCAGCTCTGTCTCTGTCACCTCGGTTCACCGCCACGCCGCCACCGCACGCTCACCTCCGTCGCAGCGCCTCTCGCCGGATCCACCAGCTCTCCTCCGCTCGCGTCTCCTCCTCCGGCCGCCTGCATCTTGCTCGCGTCTCTGTCTCTGTCTCGAGCTGTGCTTCCTGCAGCCTTGAGCTCTCTTCGTGGTGTGCTCCACTGCTCCACTGCTCCACTCTCTTTCCTGCCGAAGAAACGATGGTTTTTGGGCAAGTAGTTGTTGGACCTCCTGGCTCAGGCAAAACAACTTACTGCAATGGCATGTCTCAGTTCCTCAATCTTATTGGAAGGAAGGTTGCTATTGTCAATTTGGATCCTGCTAATGATTCATTACCCTATGAATGTGCTGTGAACATTGAGGAGCTTGTGAAACTCAGTGATGTAATGGTGGAACATTCTCTTGGTCCAAATGGGGGTCTCGTATATTGTATGGATTATATAGAGAAAAATATCGACTGGTTGGAAGCAAAATTGGAACCACTTCTAAAAGATCACTACCTACTCTTTGATTTTCCTGGCCAAGTGGAACTCTTTTTTCTTCACTCAAATGCCAAGAGTGTTATCATGAAACTCATTAAGAAATTGAACCTAAGGTTAACAGCAGTGCATCTGGTTGATGCCCATCTTTGCAGTGACCCTGGGAAGTATGTCAGTGCATTGCTTCTATCCTTATCAACAATGCTACATTTAGAACTCCCTCACATAAATGTCTTGTCAAAAATTGATTTAATTGAGAGCTATGGGAGGCTAGCCTTTAATCTTGATTTCTATACAGACGTAGAAGACTTGTCATATTTACAACACCATCTTGATCAGGATCCTCGCTCTGCGAAATACAGAAAGCTCACAAAGGAATTGTGTGAAGTTATTGACAACTTCGGTCTTGTGAGTTTTACAACCTTAGATATTCAGGACAAAGAGAGTGTAGGAAATTTAGTGAAGCTGATAGACAAAAGCAACGGGTACATATTTGCTGGCATAGAAGCAAGTGCAGTTGAATTTAGCAAGATTGCTATTGGTCACAATGATTGGGATTATTACAGATATCCTTGCTTTCTCGTGATATGCATATTTTGGATTCATTTACCTTTTACCTCATGGCTTACACTAGAAAATTTCATCACTTGCACATGTGCATTATGA 1473 0.4616 RQRAFVAKNGLCSSALFSTSRRSARAGTLLLAVASLSSSSLSSSSFCVTLTANASPHGHFCSTLAVFPSPVSTPLDLHCFFTLQTERLNPPSKTAATSALSLSPRFTATPPPHAHLRRSASRRIHQLSSARVSSSGRLHLARVSVSVSSCASCSLELSSWCAPLLHCSTLFPAEETMVFGQVVVGPPGSGKTTYCNGMSQFLNLIGRKVAIVNLDPANDSLPYECAVNIEELVKLSDVMVEHSLGPNGGLVYCMDYIEKNIDWLEAKLEPLLKDHYLLFDFPGQVELFFLHSNAKSVIMKLIKKLNLRLTAVHLVDAHLCSDPGKYVSALLLSLSTMLHLELPHINVLSKIDLIESYGRLAFNLDFYTDVEDLSYLQHHLDQDPRSAKYRKLTKELCEVIDNFGLVSFTTLDIQDKESVGNLVKLIDKSNGYIFAGIEASAVEFSKIAIGHNDWDYYRYPCFLVICIFWIHLPFTSWLTLENFITCTCAL* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2884 490 CDD GPN2 179 428 - -
Amo17g2884 490 Pfam Conserved hypothetical ATP binding protein 183 431 IPR004130 -
Amo17g2884 490 Gene3D - 180 440 IPR027417 -
Amo17g2884 490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 431 IPR027417 -
Amo17g2884 490 PANTHER XPA-BINDING PROTEIN 1-RELATED 177 456 IPR004130 -
Amo17g2884 490 PANTHER GPN-LOOP GTPASE 2 177 456 IPR030231 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2884 Amo-Chr17 130960577 130965497 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2884 K24104 - gmx:100781338 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2884 17 130960577 130965497 Amo17g2884 17 130960577 130965497 ECH
Amo08g0841 08 14573505 14578398 Amo17g2884 17 130960577 130965497 hybridization