Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2880 ATGCATACGTGGAAGCAGATCAGAGACAGGGAATTTGGTAATTTGCGCCCACATCGTTTCTCCAATCGGATCAAGTCCCGCCGCGTCTCCGACCTCCAATTGTCAAACCACAAAGACTTTCTCTCTCCTCACAAGGGCGCCCTGAACTCCCTTCAGGTTGATTTGACAGAGGGAAGATACTTGCTATCCGCTGCCGCAGATGCCTCCGTCGCCGTCTTCGACGTGCAGCGCCCCACCGAGTACGAAGCCGGTGGCCTCATATCCAAGCACCGGTGTCTGTTTCTCGTGGACAAGCAGCACCAGCTGGCGCACAAGTATGCTGTTTCCTCCGCCGTCTGGTACCCTGTGGACACTGGATTGTTCATCACTGGCTCCTTCGATCACCACATCAATGTCTGGGACACCAACACCACTCAGGTTGTGGTGAATTTCAAGATGCCTGGCAAGGTTTATCGGACTGCCATGTCCCCCTTGGCCACCTCTCACATGCTCGTCGCCGCCGCCACCGAGGATGTCCAAGTCCGCCTCTGTGACGTTGCTTCTGGTGCTTTTGCTCACACCTTGTCCGGCCACCGTGATGGAGTAATGAGTGTTGAATGGTCTACTTCAAGTGAATGGGTGTTGATGACTGGGGGATGCGATGGTGCGATACGTTTTTGGGATATTAGACGAGCCGGCTGTTTCCTTGTTTTAGATCAATCTCGGACTCAGCTTGGAAGACGCCCATCCGTACTTAAACGCTCCATGACGCACAAGGAGTCGACTTTTAAGTCTTCCTCGGCTGGCCAAACAACAAGTGCAAAAGTTCGCGTTTCACAAAAAAAGCTTCCTAATGGGAATGGGAGCAGACAGGTTGTGATTGGTAGAGTTCCATCCAAGGGATCAATAAAGCAGAGATTACATCCAGGAATGCTGTCCACTCAGGATCGCGCAACAGCTCATTATGGTGCTGTGACAGGGTTAAAAGTAACAGATGATGGCATGTATCTACTAAGCTCAGGGTCTGATTCAAGACTAAGGTTGTGGGATATTGAATCTGGCTGTGACACGCTAGTGAACTTTGAAACCGTACGCCTGCAAACAAATAAACCAATTCAATTAGCCACCTCTCAGGATTCAACCCGCGTTTTTGTTCCATGCATGAGAACTGTGAAGGCATTTGACATGTGGTCTGGGAGCACGTCTGCAACATTTCGTGGCCACTATGAATGCGTGAACTCTTGCTGGTTTAATGAACAAGATCAGGAATTATACACTGGTGGGAATGATAGACAAATTCTTGTGTGGTCACCTGCTAGGTTAATTTCAGATGAAATGGAAGAAGGAATTGCTGAAGATCAGGACAGCTGGAGTAACTGA 1359 0.4967 MHTWKQIRDREFGNLRPHRFSNRIKSRRVSDLQLSNHKDFLSPHKGALNSLQVDLTEGRYLLSAAADASVAVFDVQRPTEYEAGGLISKHRCLFLVDKQHQLAHKYAVSSAVWYPVDTGLFITGSFDHHINVWDTNTTQVVVNFKMPGKVYRTAMSPLATSHMLVAAATEDVQVRLCDVASGAFAHTLSGHRDGVMSVEWSTSSEWVLMTGGCDGAIRFWDIRRAGCFLVLDQSRTQLGRRPSVLKRSMTHKESTFKSSSAGQTTSAKVRVSQKKLPNGNGSRQVVIGRVPSKGSIKQRLHPGMLSTQDRATAHYGAVTGLKVTDDGMYLLSSGSDSRLRLWDIESGCDTLVNFETVRLQTNKPIQLATSQDSTRVFVPCMRTVKAFDMWSGSTSATFRGHYECVNSCWFNEQDQELYTGGNDRQILVWSPARLISDEMEEGIAEDQDSWSN* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2880 452 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Amo17g2880 452 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Amo17g2880 452 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Amo17g2880 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 352 IPR001680 GO:0005515
Amo17g2880 452 SMART WD40_4 34 74 IPR001680 GO:0005515
Amo17g2880 452 SMART WD40_4 181 221 IPR001680 GO:0005515
Amo17g2880 452 SMART WD40_4 95 134 IPR001680 GO:0005515
Amo17g2880 452 SMART WD40_4 301 343 IPR001680 GO:0005515
Amo17g2880 452 SMART WD40_4 391 430 IPR001680 GO:0005515
Amo17g2880 452 Pfam WD domain, G-beta repeat 186 221 IPR001680 GO:0005515
Amo17g2880 452 Pfam WD domain, G-beta repeat 103 134 IPR001680 GO:0005515
Amo17g2880 452 Pfam WD domain, G-beta repeat 394 430 IPR001680 GO:0005515
Amo17g2880 452 Pfam WD domain, G-beta repeat 312 343 IPR001680 GO:0005515
Amo17g2880 452 Gene3D - 4 279 IPR015943 GO:0005515
Amo17g2880 452 Gene3D - 293 433 IPR015943 GO:0005515
Amo17g2880 452 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Amo17g2880 452 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Amo17g2880 452 SUPERFAMILY WD40 repeat-like 40 431 IPR036322 GO:0005515
Amo17g2880 452 MobiDBLite consensus disorder prediction 254 280 - -
Amo17g2880 452 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 4 451 IPR042238 GO:0006283
Amo17g2880 452 MobiDBLite consensus disorder prediction 246 284 - -
Amo17g2880 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 143 IPR001680 GO:0005515
Amo17g2880 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 223 IPR001680 GO:0005515
Amo17g2880 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 430 IPR001680 GO:0005515
Amo17g2880 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 223 - -
Amo17g2880 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 347 - -
Amo17g2880 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2880 Amo-Chr17 130914674 130917849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2880 99 228 Miscellaneous Gene Families AT5G08390 26.923 3.30e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2880 K10570 - gmx:100790433 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2880 17 130914674 130917849 Amo17g2880 17 130914674 130917849 ECH
Amo08g0796 08 14124784 14127517 Amo17g2880 17 130914674 130917849 hybridization