Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2851 ATGTCGAGTCAAACTTCCGCTGCTTTTCTCGACGACGAACTTTCTGGAGCCTCGTCGCTGTCGTCGTTCCCGTTTTCTCAGCCACCGAACTCCCCTTATCAGCCGAACCAAAACCCCTATGAAATTCAAACCCTAGACGACGCTTTTGATCGTCTTTCTGTCTCCCCTTTCAGCTTCAACAATCTCCCGCCATCTCTTCCTTTCGATCATCGCGATGGTTTCAACGCCGTTACAAAAACCGAGCCTTTTGATCGCCGTGGCCATCAACACCTTCAAAGCTCCAATCTTGTGGGCCAAATTCAAGAGACACATGGCGGCTCCATCAACAACACGAGAGCTGCTGCCAATGCTGCCTTGGTGACACCGGAGAATAATCCTCCGGAGGGACACGACGGAGACGCTGGAAACTCGAACGGCATTTGGCCCGGTTCTTCCAATAGAACAATCGGTGCTTCAAGCAGGTCCTACAGCTCTTCAATGAATGATTTTTTTCCGAGTGGATACAGTAGCAGGGGTTTTCCGAGTATGCCGTTTTCGAATGGGGCTGTTGATCAATTTCATCAACGAAATTCGGGTGTAGGAGGTGGTTCGAGTTTACCGGTTGTGATGATGGCTAAGGATCAGAACGGAAGCAGGATTTTGCGGCAGAAGTTGGAAAGATTGACCCCTCAGGAGGTTTCTTTGGCGTTCTTGGAGATGATAAATCATTTTGCTGAGTTGATGGTTGATCCTTGTGGGAGCAAAGTTGTTCTTGATATTCTTAAACTTATCAGGGAACAACAGAGGACCCTCATCATCATGATGATAACCAAAGTTAATTTACAGCTTGTTGAAATATGCCTTAACCCTCATGGGTCCTGCACTGTTGAGAAATTATTGGAACATGTTACCAACCAGGAGCAACGAGCCCTTATTGTGAGAGGTTTAAGACCTGGTGCTGTTTCATTGGCTACTGATACACATGGTCATAGGGTACTTATGTATTGTCTTAAGCATTTTTCTCATGAAGAGAGTAAGTATCTTCTAAGCGAACTTGCAAATCACCTCTTTGGGATCGCGACAGATAAGACCGGTTGTTGTGTGATACAAGAATGTGTAAAATATGCACATGGACAACTCAAACTGCAACTGATTGCTGAGATTATATTGAATGCTCAACAACTATCCGAAGACTCTTACGGTAACTATGTTGTACAACATTTATTGGGTTTGCAAATACCAGCAGTGACAGAAAGTCTAATGAGACAGCTTGAAGGGTCATTCTTTTATCTTTCATGCAATAAATATGGAAGTAATGTTGTGGAGAAGTTCTTTCAGTGCTCGGAAGAACAGAATGCGGCACGTATTACTGTGGAGTTGCTCTGCCACCCAAATGTAGCAATGCTTCTTGTAGATCCCTATGGAAATTATGTTATACAATCGGCTCTGGTGATGTCCAAGGATCCTATTAGAAGTTCCATATTGCTGCTGATCCAACAGAATTATCCAATGATGCGTAGCAATGTCTATGGCCAAAAGATTCTTGAGAGGAGGAACTTTCTGTAA 1545 0.4427 MSSQTSAAFLDDELSGASSLSSFPFSQPPNSPYQPNQNPYEIQTLDDAFDRLSVSPFSFNNLPPSLPFDHRDGFNAVTKTEPFDRRGHQHLQSSNLVGQIQETHGGSINNTRAAANAALVTPENNPPEGHDGDAGNSNGIWPGSSNRTIGASSRSYSSSMNDFFPSGYSSRGFPSMPFSNGAVDQFHQRNSGVGGGSSLPVVMMAKDQNGSRILRQKLERLTPQEVSLAFLEMINHFAELMVDPCGSKVVLDILKLIREQQRTLIIMMITKVNLQLVEICLNPHGSCTVEKLLEHVTNQEQRALIVRGLRPGAVSLATDTHGHRVLMYCLKHFSHEESKYLLSELANHLFGIATDKTGCCVIQECVKYAHGQLKLQLIAEIILNAQQLSEDSYGNYVVQHLLGLQIPAVTESLMRQLEGSFFYLSCNKYGSNVVEKFFQCSEEQNAARITVELLCHPNVAMLLVDPYGNYVIQSALVMSKDPIRSSILLLIQQNYPMMRSNVYGQKILERRNFL* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2851 514 MobiDBLite consensus disorder prediction 1 40 - -
Amo17g2851 514 PANTHER PUMILIO HOMOLOG 15 160 509 - -
Amo17g2851 514 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 174 514 IPR033133 GO:0003723
Amo17g2851 514 ProSiteProfiles Pumilio RNA-binding repeat profile. 452 489 IPR001313 GO:0003723
Amo17g2851 514 MobiDBLite consensus disorder prediction 122 152 - -
Amo17g2851 514 SUPERFAMILY ARM repeat 202 512 IPR016024 -
Amo17g2851 514 Pfam Pumilio-family RNA binding repeat 421 453 IPR001313 GO:0003723
Amo17g2851 514 Pfam Pumilio-family RNA binding repeat 236 269 IPR001313 GO:0003723
Amo17g2851 514 Pfam Pumilio-family RNA binding repeat 314 345 IPR001313 GO:0003723
Amo17g2851 514 Pfam Pumilio-family RNA binding repeat 387 402 IPR001313 GO:0003723
Amo17g2851 514 Pfam Pumilio-family RNA binding repeat 201 227 IPR001313 GO:0003723
Amo17g2851 514 Pfam Pumilio-family RNA binding repeat 348 382 IPR001313 GO:0003723
Amo17g2851 514 Pfam Pumilio-family RNA binding repeat 275 306 IPR001313 GO:0003723
Amo17g2851 514 Pfam Pumilio-family RNA binding repeat 458 488 IPR001313 GO:0003723
Amo17g2851 514 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 160 509 - -
Amo17g2851 514 SMART pum_5 344 379 IPR001313 GO:0003723
Amo17g2851 514 SMART pum_5 380 415 IPR001313 GO:0003723
Amo17g2851 514 SMART pum_5 196 231 IPR001313 GO:0003723
Amo17g2851 514 SMART pum_5 232 267 IPR001313 GO:0003723
Amo17g2851 514 SMART pum_5 308 343 IPR001313 GO:0003723
Amo17g2851 514 SMART pum_5 271 307 IPR001313 GO:0003723
Amo17g2851 514 SMART pum_5 416 451 IPR001313 GO:0003723
Amo17g2851 514 SMART pum_5 454 489 IPR001313 GO:0003723
Amo17g2851 514 ProSiteProfiles Pumilio RNA-binding repeat profile. 232 267 IPR001313 GO:0003723
Amo17g2851 514 ProSiteProfiles Pumilio RNA-binding repeat profile. 344 380 IPR001313 GO:0003723
Amo17g2851 514 ProSiteProfiles Pumilio RNA-binding repeat profile. 308 343 IPR001313 GO:0003723
Amo17g2851 514 ProSiteProfiles Pumilio RNA-binding repeat profile. 416 451 IPR001313 GO:0003723
Amo17g2851 514 ProSiteProfiles Pumilio RNA-binding repeat profile. 271 307 IPR001313 GO:0003723
Amo17g2851 514 MobiDBLite consensus disorder prediction 1 27 - -
Amo17g2851 514 MobiDBLite consensus disorder prediction 138 152 - -
Amo17g2851 514 Gene3D - 198 513 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2851 Amo-Chr17 130592891 130596609 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2851 - - adu:107461162 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2851 17 130592891 130596609 Amo17g2851 17 130592891 130596609 ECH