Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2824 ATGGAACACGCCGACGTTTTCCTTGGCTTACACGACTTCCTCGAGCGGATGCGCCAACCCTCCGCCGCCGATTTCGTCAAAGCCATCAAGAGTTTCATAGTGTCGTTTTCGAACAATGCACCTGATCCTGAGAGGGACGGTGGCGCAGTGCAAGAGTTCTTTGCCAACATGGAAGCTGCTTTTAGGGCTCATCCACTTTGGGCTGGTTGCTCTGATGAAGAGCTCGAAAGTGCTGGTGAAGGGCTTGAGAAGTATGTCATGACAAAGTTGTTTGCCCGTGTATTTGCTTCTCTTCCAGAGGATGTAAAACTTGATGACCAACTTTCTGAAAAGATGGCTTTAGTTCAACAGTTCATCAAGCCAGAAAATTTGGATATCAAGCCAGCCTTTGAGAATGAAACATCGTGGTTGCTTGCACAAAAAGAATTGCAGAAAATCAACATGTACAAGGCACCCAGAGACAAACTTGTCTGTATACTAAATTGCTGCAAGGTTATCGGTAACTTGCTGCTTAATGCTTCTCTCGCATCCAAAGATAGTCCTCCAGGAGCTGATGATTTTCTTCCTGTGCTAATTTATGTTACCATAAAGGCGAACCCTCCACAACTGCACTCAAATCTACTGTATATACAAAGATTTAGACGCCAATCACGATTGACTGGGGAAGCAGCATATTACTTTACAAATATGCTCTCTGTTGAGTCCTTCATCTCAAACATCGATGCAAAAGCCCTTTCAATGGATGAAAGTGAGTTTGAGAGAAACATGGAATTCGCCCGCACCCTTCTGTCGGGGCTTTCAGCTAGTACACAAGATTCCGGTTCAACTTACCAAAATCATGGAAACCAGCCAAGATCAGAAGCCACCAAGCACCAAAAAAGAGCTTCAAATGATAATAACGATGCCTTATTACAAACTGCTCCATCTCTTCCAAAATACGAAAATAAGAATATGACCCTCGCAGATGAGTCATTAATCACAAAGGTTCCATCCCTCTCAGAGTTGGAGAACAAAGGGGCAAATATGCTTTTAAAGGAGGATAAATTGAATGAAGTTTTCAGGGAGTACCCATATTTGTTTGCCAGTGTAGGTGACCTAACAGTAGGTGATGTTGAAGACCTACTGAACAATTATAAACAACTTGTTTTCAAGTATGTTTCTCTCTCCAAGGGGTTAGGAGTCTCCACTAAATCTCATCCTTCATCATCTAATCCACCAAACAATGTTCAAGTCCATGATGAAACCACAGTAGAGTCAGCATCAGATGGTGGACATGTAGATGCCCACGAGAAATCAGAAGATTCTAATGATTCAAGTAAAAAAGAGGATAGTTCAGAAAAAGTTTCACCAGATGAGGAGAAAACAGTTGAATCTGTTGTGCCACAGGATGAAACAGCTGCACCAGAAGGTGGGACCAGTGTAGAATCCTCTGATTAG 1437 0.4273 MEHADVFLGLHDFLERMRQPSAADFVKAIKSFIVSFSNNAPDPERDGGAVQEFFANMEAAFRAHPLWAGCSDEELESAGEGLEKYVMTKLFARVFASLPEDVKLDDQLSEKMALVQQFIKPENLDIKPAFENETSWLLAQKELQKINMYKAPRDKLVCILNCCKVIGNLLLNASLASKDSPPGADDFLPVLIYVTIKANPPQLHSNLLYIQRFRRQSRLTGEAAYYFTNMLSVESFISNIDAKALSMDESEFERNMEFARTLLSGLSASTQDSGSTYQNHGNQPRSEATKHQKRASNDNNDALLQTAPSLPKYENKNMTLADESLITKVPSLSELENKGANMLLKEDKLNEVFREYPYLFASVGDLTVGDVEDLLNNYKQLVFKYVSLSKGLGVSTKSHPSSSNPPNNVQVHDETTVESASDGGHVDAHEKSEDSNDSSKKEDSSEKVSPDEEKTVESVVPQDETAAPEGGTSVESSD* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2824 478 MobiDBLite consensus disorder prediction 269 285 - -
Amo17g2824 478 MobiDBLite consensus disorder prediction 269 309 - -
Amo17g2824 478 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Amo17g2824 478 Gene3D VPS9 domain 99 264 IPR037191 -
Amo17g2824 478 Gene3D - 17 97 - -
Amo17g2824 478 MobiDBLite consensus disorder prediction 393 478 - -
Amo17g2824 478 MobiDBLite consensus disorder prediction 418 459 - -
Amo17g2824 478 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Amo17g2824 478 PANTHER BNAC09G47180D PROTEIN 1 411 - -
Amo17g2824 478 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Amo17g2824 478 SMART vps9_2 135 255 IPR003123 -
Amo17g2824 478 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Amo17g2824 478 MobiDBLite consensus disorder prediction 393 417 - -
Amo17g2824 478 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 411 IPR045046 GO:0005085|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2824 Amo-Chr17 130142676 130147179 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2824 K20131 - gmx:100810958 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2824 17 130142676 130147179 Amo17g2824 17 130142676 130147179 ECH
Amo08g0735 08 13063144 13067600 Amo17g2824 17 130142676 130147179 hybridization