Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2819 ATGGATGCTCAACCAGGTTTATCTCTCGGCTTGAACGCGCATATCTCATCCCCTGTTTCTTCTCACTCTGCTACGCTCACTGATAACTCTTTCTCATTCCCCATTCCAAATCCTTCCGTTCCGTGGCAGCAATTACTCGTCGACGAAGACTACAAGCCTCTTGATAAACTCAAACACGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGTTGATCAAGAAGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAGGGGGAATCATAGACGAAGAAGAAGAACAGGAACAAAAGGAACAGGAGAGGAAGCAGCACCAAACGATTAACTTCATGGGGCGTTCTTTTCCGGTGAAGAGAAGGCATATAGAGGGTTCTGAATCGTACTTCCCTTCAAAGCGTTTCGCCGAGGACTCGAATTCGAATTCAAATTCAAATTCAACGGTCGAGGGGCGCAAAGCTTCGGTGCTGTCATGGGGGAACCAGCCACTTGGAATCGCAGACCCCGAAATCTTCGAGATCATGGAGAAGGAGAAGAAAAGACAGTTCAAAGGAATCGAATTGATCGCTTCGGAGAATTTTGTGTGCAAGGCAGTGATGGAAGCATTGGGAAGCCATTTGACTAATAAGTATTCTGAGGGAATGCCCGGTAACAAGTACTACACTGGGAATCAGCACATTGATCAGCTTGAGTTTCTATGCTGCGAGCGTGCTTTGGTTGCTTTTGATCTTGATCCTAACAAATGGGGTGTGAATGTTCAGCCATATTCCTGCACTTCTGCGAATTTCGCGGTTTACACGGGTCTTTTGCATCCTGGAGACAGAATCATGGGAATGGATTCTGCTTCTGGGGGACACTTGAGTCATGGCTATTACACTATGAGTGGGAAGAAGGTTTCTGCTGCTTCAATTTTCTTCGAGACAATGCCTTACAAGGTTAATCACTTAACTGGGTACATTGATTATGAGAAGCTTGAGGAGAAAGCTATGGACTTTAGGCCAAAGATACTTATTTGTGGTGGGAGTTCTTACCCTCGAGAATGGGATTATGGGAAGTTCAGGATGATTGCTGATAAATGTGGTGCAGTGTTGATGTGTGACATGGCTCATGTTAGTGGTCTTGTGGCGGCTAAGGAAGTGGCTAGTCCATTTGATTACTGTGATATTGTTACCTCAACAACCCACAAAAGCCTTCGGGGTCCAAGGGGAGGCATTGTTTTTTACAGGAGAGGAGCGAAACCAAGGAAACCAGGCCATGTTCATTATCATGGAGATGATGTTAATTATGATTTTGAGGAGAAGATAAACTTTGCTTTGTATCCATCGTTACAGGGAGGTCCTCATAATAACCACATCGCTGCTCTTGCCGTGGCTTTGAAACAAGTTGCAACTCCAGAGTACAAAGCATATATGCAGCAGGTGAAGAAAAATGCGCAGGCATTAGCTTCTGCTTTGTTGAAAAGAAAATGCAGATTAGTGACTGATGGAACCGACAATCATCTGTTGCTTTGGGATCTAACTGCACTTGGCTTGAATGACAGAAATTATGAGAAGGTCTGCGAGGCATGTCACATCACTCTAAACAAATGCGCCATTTATGGTTCTACTTCTCCTGGAGGAGTGAGAATTGGTACCCCTGCAATGACATCAAGAGGGTGTGTAGAGGAAGATTTTGAGACCATAGCTGACTTCCTTTTGAAGGCAGCTCAGATTACCAGCAGCATTGTACAGCGGGAACATGCCAAACCGTTCAAGGATTTCGTCAAGAATCTTCAGATCAACAAAGATATTTCCAATCTCAGAAATCAGGTCGAGGCATTTAGTTCCCGGTTTGCTATGCCGGGATTCGATTTCTGA 1872 0.4439 MDAQPGLSLGLNAHISSPVSSHSATLTDNSFSFPIPNPSVPWQQLLVDEDYKPLDKLKHEEEEEEEEEEDDDDDDDVDQEEEEEEEEEEEEGGIIDEEEEQEQKEQERKQHQTINFMGRSFPVKRRHIEGSESYFPSKRFAEDSNSNSNSNSTVEGRKASVLSWGNQPLGIADPEIFEIMEKEKKRQFKGIELIASENFVCKAVMEALGSHLTNKYSEGMPGNKYYTGNQHIDQLEFLCCERALVAFDLDPNKWGVNVQPYSCTSANFAVYTGLLHPGDRIMGMDSASGGHLSHGYYTMSGKKVSAASIFFETMPYKVNHLTGYIDYEKLEEKAMDFRPKILICGGSSYPREWDYGKFRMIADKCGAVLMCDMAHVSGLVAAKEVASPFDYCDIVTSTTHKSLRGPRGGIVFYRRGAKPRKPGHVHYHGDDVNYDFEEKINFALYPSLQGGPHNNHIAALAVALKQVATPEYKAYMQQVKKNAQALASALLKRKCRLVTDGTDNHLLLWDLTALGLNDRNYEKVCEACHITLNKCAIYGSTSPGGVRIGTPAMTSRGCVEEDFETIADFLLKAAQITSSIVQREHAKPFKDFVKNLQINKDISNLRNQVEAFSSRFAMPGFDF* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2819 623 Coils Coil 94 115 - -
Amo17g2819 623 Gene3D - 198 477 IPR015421 GO:0003824
Amo17g2819 623 CDD SHMT 173 596 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Amo17g2819 623 MobiDBLite consensus disorder prediction 60 101 - -
Amo17g2819 623 Pfam Serine hydroxymethyltransferase 172 569 IPR039429 -
Amo17g2819 623 SUPERFAMILY PLP-dependent transferases 165 620 IPR015424 -
Amo17g2819 623 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 393 409 IPR019798 GO:0030170
Amo17g2819 623 Hamap Serine hydroxymethyltransferase [glyA]. 168 620 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Amo17g2819 623 MobiDBLite consensus disorder prediction 1 122 - -
Amo17g2819 623 Coils Coil 54 74 - -
Amo17g2819 623 Gene3D Aspartate Aminotransferase, domain 1 173 619 IPR015422 GO:0003824
Amo17g2819 623 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 7 139 622 - -
Amo17g2819 623 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 139 622 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Amo17g2819 623 MobiDBLite consensus disorder prediction 10 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2819 Amo-Chr17 130005045 130008376 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2819 K00600 - gmx:100776419 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2819 17 130005045 130008376 Amo17g2819 17 130005045 130008376 ECH