Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2816 ATGGCGGCGGAAGGAGGTTCCGATCAATTCATCGACATCGTTAAGCTCTCTCCTCCGGCAAAGTTCCCGGCGGCATTCCCCCAGGACCTCAAGGTGGCTCCCTCCTTGAAGCGCCGCCGRTCTGGCGGTGACACGTGGGTGGTGTCAGTGTTCGTGATCATCCACGTGGGCGTCTTCATCGCAACGATGCTGGTCAATGATTGCTGGACGAACTCCAACGGCGACTGCGCCCTAAAAACCCTCGGAAGGTTCTCCTTCCAACCTCTCTCTGAGAATCCTCTCTTAGGCCCTTCTCAGTCCAAATTAGAGGAAATGGGAGCGCTTCGGAGGAATTTCGTGACAGAGTATCACCAAACTTGGCGTCTTTTCACCTCTCCATTTCTTCATGCTGGGCTCTTCCACCTCCTCCTCAATCTCTGCAGTATCATCTTCATCGGAATTCACCTAGAGCGCGAGCTTGGACCGTTACGGATTGGTGTAATCTATGCAATGTCTGCATTTGGGGGAGCCTTGATGGCTTCTCTTTTTCTTCAGCATACCCCAGCTGTTGCCTCTTCTGGGGCTTTGTATGGATTACTCGGAACTTTACTCTCTGAGCTCATTTGGAACTGGGAATTACAAACCAAAAGGGTTTCAGCAATAGTCTCTTTTGTCTTTGTATTTGTTTGCAATTTCATCCTTGGCTTTCTGCCTTATGTCGACAACTTTGCGAGCATTGGAGGTTTCGTATCAGGGTTCCTTCTTGGATCTGTACTTCTACTCAGCAGAAGGCTTGAACTGCCAAAGGTTCCAATCAAAGGAACTCTCTTTGATTATGGTGTCAAGAGTTACATCAAGTTAAAGTTGAAGCAAAACATGGACAGACCGGTTCTCAGGATTGTTTCTTTTATCCTCTTTAGCCTGATATTGGCCGGTTGTCTTGTGGCAGTTCTTCACGGGATCAACATCAATAGTTATTGCACATGGTGCCCATATGTTGACTGTATCCCTTATACAAGCTGGCACTGCCAAAATGGAGAAACCTCTTGTAAGACAATGGTGAGCGATGATCAGATGACATTGACCTGTATGGGGAATGGAAACTTCAGGGTCTTTCCTTTTACGAACATCTCTCGGACAAGGATCAGTGATCTATGCAATCTGATATGCTGA 1152 0.4757 MAAEGGSDQFIDIVKLSPPAKFPAAFPQDLKVAPSLKRRRSGGDTWVVSVFVIIHVGVFIATMLVNDCWTNSNGDCALKTLGRFSFQPLSENPLLGPSQSKLEEMGALRRNFVTEYHQTWRLFTSPFLHAGLFHLLLNLCSIIFIGIHLERELGPLRIGVIYAMSAFGGALMASLFLQHTPAVASSGALYGLLGTLLSELIWNWELQTKRVSAIVSFVFVFVCNFILGFLPYVDNFASIGGFVSGFLLGSVLLLSRRLELPKVPIKGTLFDYGVKSYIKLKLKQNMDRPVLRIVSFILFSLILAGCLVAVLHGININSYCTWCPYVDCIPYTSWHCQNGETSCKTMVSDDQMTLTCMGNGNFRVFPFTNISRTRISDLCNLIC* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2816 383 Gene3D - 43 259 IPR035952 -
Amo17g2816 383 Pfam Rhomboid family 115 254 IPR022764 GO:0004252|GO:0016021
Amo17g2816 383 PANTHER RHOMBOID-RELATED 38 383 IPR002610 GO:0004252|GO:0006508|GO:0016021
Amo17g2816 383 SUPERFAMILY Rhomboid-like 45 257 IPR035952 -
Amo17g2816 383 PANTHER RHOMBOID-LIKE PROTEIN 8 38 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2816 Amo-Chr17 129919860 129922172 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2816 - - gmx:100775875 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2816 17 129919860 129922172 Amo17g2816 17 129919860 129922172 ECH