Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2789 ATGGAGCGGTTCGACAACGACGACCTTCAGTACGTTGTCCATGACTACTTCGACTTCTCTGACTTCGAAGACGACGTTGCACTCACCAATTCTGATCCTTTGGATGACTCCGACCTCGATGAAAGCTTCCAGACGAGTAATTCGAAGACTGATACGTCTGCTTCGGAAGCTAGAAAAGGGAAAGATATACAGGGGATTCCATGGGAGAAGCTTAACTACAGCAGACAGAAGTACCGCGAGACTCGATTGAAGCAGTACAAGAACTACGAGAACCTCTCGCATTCTCGCGAGGATCTCGACAAGGAGTGTTTGGAAGTGCAGAAGGGGAAGGCCTTCTATGACTTCCAGTTCAACACAAGGCTTGTAAAATCCACAATTATCCATTTTCAGCTGAGGAATTTATTGTGGGCGACATCCAAGCATGATGTATACCTTATGCAAAACTACTCGGTGATGCATTGGTCCTCATTACAACAAAGGGGTAAAGAAGTTTTTAATGTGGCCACACCCATAGTTCCGACCCTTGAGTGCCCTGGACTTTTAGCTCGGCCCGTCTACAGAGTTCAAATAAGCACCATGGTAGTCAAGGAAAATTTGGTGGTGGCAGGTGGTTTTCATGGCGAGCTCGTTTGCAAGAATTTGCGGCATCCTGGTGTTGCATTCTGCAGTAAAATAACTCCTGGTAATGCCATAACCAATGCTGTTGATGTTTACCGCCATCCAAGTGGGTCGCTGAGGGTTGTTGCAGCAAATAATGATTCCCAAGTTCAGACGTTCGATGCAGAAAATTTTGCTTCCGTGGGTTGTTTTCAATATGATTGGTCTGTTAATAATACTTCTGTCAGTCCAGATGGCAGGTTGATGGCTATTCTTGGTGACAGTGCTGAGTGCTTGTTAGCTGATGCCAACTCCGGGAAGGTTGTTGGGAGCCTAAAAGGGCACTTGGACTACTCTTTCTCGTCTGCTTGGCACCCAGATGGAAGAATATTGGCTACGGGGAACCAGGACACAACATGCAGGTTATGGGACATAAGGAACCTTTCAGAATCCGTAGGTGTGCTCAAGGGAAGAATGGGTGCAATAAGAGCCTTAAGGTTCACATCTGATGGGAAGTTCTTGGCCATGGCTGAGCCAGCAGACTTTGTCCATATATTTGACTCCAAGTCTGGCTATGTGCAAGCTCAAGAGATTGATCTATTTGGTGAAATTGCTGGGATATCCTTTAGCCCGGACACGGAGGCCTTATTTATTGGTATTGCCGACCGTACCTATGGAAGCTTGTTAGAGTTCATCAGAAAACGTGACAATAATTACCTTGCCTCTATGTTTTAA 1332 0.4602 MERFDNDDLQYVVHDYFDFSDFEDDVALTNSDPLDDSDLDESFQTSNSKTDTSASEARKGKDIQGIPWEKLNYSRQKYRETRLKQYKNYENLSHSREDLDKECLEVQKGKAFYDFQFNTRLVKSTIIHFQLRNLLWATSKHDVYLMQNYSVMHWSSLQQRGKEVFNVATPIVPTLECPGLLARPVYRVQISTMVVKENLVVAGGFHGELVCKNLRHPGVAFCSKITPGNAITNAVDVYRHPSGSLRVVAANNDSQVQTFDAENFASVGCFQYDWSVNNTSVSPDGRLMAILGDSAECLLADANSGKVVGSLKGHLDYSFSSAWHPDGRILATGNQDTTCRLWDIRNLSESVGVLKGRMGAIRALRFTSDGKFLAMAEPADFVHIFDSKSGYVQAQEIDLFGEIAGISFSPDTEALFIGIADRTYGSLLEFIRKRDNNYLASMF* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2789 443 Pfam WD domain, G-beta repeat 306 343 IPR001680 GO:0005515
Amo17g2789 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 346 IPR001680 GO:0005515
Amo17g2789 443 Gene3D - 217 441 IPR015943 GO:0005515
Amo17g2789 443 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Amo17g2789 443 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 442 - -
Amo17g2789 443 SUPERFAMILY WD40 repeat-like 182 423 IPR036322 GO:0005515
Amo17g2789 443 PANTHER OS03G0386000 PROTEIN 1 442 - -
Amo17g2789 443 MobiDBLite consensus disorder prediction 30 60 - -
Amo17g2789 443 SMART WD40_4 263 301 IPR001680 GO:0005515
Amo17g2789 443 SMART WD40_4 304 343 IPR001680 GO:0005515
Amo17g2789 443 SMART WD40_4 347 386 IPR001680 GO:0005515
Amo17g2789 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 311 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2789 Amo-Chr17 129301186 129305499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2789 287 423 Miscellaneous Gene Families AT5G08390 31.387 1.02e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2789 - - gmx:100775453 715.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2789 17 129301186 129305499 Amo17g2789 17 129301186 129305499 ECH