Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2780 ATGCTGTTGCGGGTTCTTCTCTTTCACTCTCTGCTGCGTTATCCTTCGTTGAGATCAAAACCAGTGAACAAAACAAGCGTTTCTTACTGCTACTGCAATAATCTCTCTGCATCCACGTTCATGGCGTCTTCAGTGGATTGCAGCACACTGGTTTTATGCGGTAAATCATTGGCAGAGATAGAAGCTGCTAAAGCTATTAAGAGCAGTAACACTCTCAAGCTCCCTGACAATGGAGAACTATCAATTGTTTTGCAATCAGAATTGGATGGTGAAAATGTTATGAGAAGGTCCTTCAATGTTGATTCTTTCATGAATTCTCTTTGCACTGATACATTTGGCAGGCTTCTTGTTTGGTCGCCGCGGTTAGCTTCTACACATGATGTAGTTTCACACAACTTTTGTGAGCTTCCTATTGGTTCAGTTTGTGTTGCTGATGTTCAGACCAAGGGGCGAGGTCGGTCAAAGAATGTCTGGGAGTCTCCGTTAGGTTGTCTCCTGTTTTCCTTTACTCTGCAAATGGAGGACGGGCGAATAGTTCCGTTGGTGCAGTATGTGGTTTCCCTTGCTATCACAGAAGCAGTGAAGGATATTTGCAACAAAAATGGATTACCCTCCGTTGACGTCAAAATCAAGTGGCCAAATGATCTTTATTTAAACGGCTTAAAAGTTGGCGGCATTCTTTGCACCTCAACCTATAAGTTGAAGAAGTTCAATGTCAGTGCAGGTATAGGCTTGAATGTCAGTAACGAGAAGCCAACAACATGCTTAAATACAGAACTTAGAGAATTGTCAGTGGAGGCTTACCGATTTCAAAGAGAAGATGTTCTGGCAACCTTTTTTAACAAATTTGAGACATTTTATCGTCTATTTATCGATCAAGGATTTCAAAGCCTGGAGGAGCTATATTATAAGACATGGTTGCACAGTGGACAGAGAGTTATTGTACAAGAAAAGAACGACGACAATGTGGTCGAGCATGTGGTAACTATTCAGGGTTTGACATCTTCAGGATATTTATTGGCTGTTGGTGATGATAGTCAATTGTGTGAGCTCCACCCTGATGGTAATAGCTTTGATTTTTTCAAAGGACTTGTGAGGAGGAAACTTGAGTGA 1113 0.416 MLLRVLLFHSLLRYPSLRSKPVNKTSVSYCYCNNLSASTFMASSVDCSTLVLCGKSLAEIEAAKAIKSSNTLKLPDNGELSIVLQSELDGENVMRRSFNVDSFMNSLCTDTFGRLLVWSPRLASTHDVVSHNFCELPIGSVCVADVQTKGRGRSKNVWESPLGCLLFSFTLQMEDGRIVPLVQYVVSLAITEAVKDICNKNGLPSVDVKIKWPNDLYLNGLKVGGILCTSTYKLKKFNVSAGIGLNVSNEKPTTCLNTELRELSVEAYRFQREDVLATFFNKFETFYRLFIDQGFQSLEELYYKTWLHSGQRVIVQEKNDDNVVEHVVTIQGLTSSGYLLAVGDDSQLCELHPDGNSFDFFKGLVRRKLE* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2780 370 ProSiteProfiles Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile. 101 291 IPR004143 GO:0036211
Amo17g2780 370 Pfam Biotin protein ligase C terminal domain 308 363 IPR003142 GO:0036211
Amo17g2780 370 Pfam Biotin/lipoate A/B protein ligase family 120 246 IPR004143 GO:0036211
Amo17g2780 370 PANTHER BIOTIN PROTEIN LIGASE 68 368 - -
Amo17g2780 370 PANTHER HOLOCARBOXYLASE SYNTHETASE (BIOTIN-(PROPRIONYL-COA-CARBOXYLASE (ATP-HYDROLYSING)) LIGASE) 68 368 - -
Amo17g2780 370 TIGRFAM birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 120 341 IPR004408 GO:0004077|GO:0036211
Amo17g2780 370 Gene3D Bira Bifunctional Protein; Domain 2 104 305 IPR045864 -
Amo17g2780 370 CDD BPL 116 290 IPR004408 GO:0004077|GO:0036211
Amo17g2780 370 SUPERFAMILY Class II aaRS and biotin synthetases 103 306 IPR045864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2780 Amo-Chr17 129054793 129058612 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2780 K01942 - gmx:100818402 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2780 17 129054793 129058612 Amo17g2780 17 129054793 129058612 ECH