Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2776 ATGGATATAAACAGAATCCAATTAGCTCTGCGCTCTTGTGGGATCTTTCAATCTATCAAACACGCCAAATCACTTCACTCTTGCATCATAAAACTTGGCTTTCTGAATCATGTTTTCCCCGTAAACAACATGATCTCTGTCTATGCAAAGTGTCTCCATGTAGATGATGCGCGAAACCTGTTTGACGAAATGCCTCACAGAAACATCGTTACTTGGACCACAATGCTCTCTGCATACACCAATTCTGGGAGTCCCCACGTGGCCCTTTCGCTTTACAATCAGATGCTGCAATCTGAAACAGAGGAGCCCAATGGGTTCTTGTACTCTGCGGTTCTCAAGGCGTGTGGTCTAGTGGGTGATGTTGAACTGGGTAGGTTTGTTCACCAGCATGTAGCTCAGGCAAAAATGGAATTTGACACTGTTCTGATGAATGCACTTTTGGACATGTATGTCAAATGTGGGAGCTTGAAGGATGCAAAGCAAGTTTTTTATGAGACCCCACTTAAGAATTCGACTTCATGGAACACGCTCATTCTGGGTCATGCTAAAAGTGGCTTGGTGGGCGATGCTCTGAAGCTGTTTGATCAAATGCCGGAACGTGATATTGTTTCTTGGAATAGCATCGTTGCTGGTCTAGCAAGTACTGGAAGCCCCCATGCATTACAGTTTGTTGCTAGGATGCACGTGCTAGGCTTTAAACTAGATGAGTTCACATTCCCACGCGCTCTCAAAATTTGCGGTCAGGTTGGTGAAATAGCAACGGGGAAACAAATTCATTGTTATGTTATCAAGTCAGGGTTTGAGTCTTGCAGTTACTGTATATCAGCGTTGATTGATATGTATTCCAATTGCAAGTTATTGGATGAAGCAATGTTGATCTTTGATCAGTTCTTCGACAATTCTTTTGTTGTCGAAAGCTTGGCACTTTGGAATTGTATGCTTTCTGGATATGTTGTCAATGGGAATTATGGAAAGGCTCTTAGTCTGATTGCACATATCCATAAAACTGGTGCATATTTCGATTCCTATACCTTTAGTATTGCTTTAAAGGTTTGTATGTACTTCCAGAACTTGAGGTTGGCATCTCAGGTGCATGGTTTGGTCATCACAAGTGGCTATGAGTTAGATTGCGTTATTGGAAGCATTCTTATTGATCTCTATGCGAACCAGGGGAATATTAATATTGCTTTGAGATTGTTTGAAAAGTTGCCAGATAAAGATGTTGTGGCTTGGTCTAGTGTGATTGCTGCTTGTGCTAGATCTGGCTTAGATTCATTGGCTCTATCCCTCTTTACGAATATGACTCGTATGGATCTTGAGATTGACCATTTTATCCTTACAGTTGTTCTTAAAGTTTGTTCAACCTTGGCATCTCAGAGAATTGGAAAGCAAATTCATGCTAACTGTCTTAAAAAGGGATATGAATCAGAGGGAGTTATTGCAACTGCTCTTATTGATATGTACTCAAAATGTGGTGACATTGAGGATGCCTTAGCGTTGTTTGGCTGTCTTTCAGAAAGAGACACTATGTGTTGGACAGGGATTATTGTTGGATGTGCACAAAACGGAAGAGTAGACGAGGCAATCAATCTTTTGCATAAGATGATAGAATCTGGTGAAAAGCCAAATGAAATCACCATTCTAGGTGCTCTTACGGCTTGTAGGCATGCTGGCCTAGTTGAAGAGGCATGGGCCATATTTAATTCTGTTGAAACAGACCATGGATTGAAAAGGTGCCTAGAGCATTACAGTTGTATGGTTGATCTACTTGGTCAAGCAGGACGCTTCGAAGAAGCACTAAAATTGATTAGTGACATGCCATTTAAGCCTGACAAGACGATATGGTTCTCCTTGCTTGGCGCTTGTGGAACTCACAAGAACCAGTATCTTGCTAATGTTGTTGCTGAGCATCTTCGTGCTACATTTCCAGAGGATGCTTCTGTATATGTAATGCTGTCAAACGTTTATGCAACTCTTGGAATGTGGGATAGTTTAAGCGAAGCAAGGGAAGCCTTGAAAAAAGTAGGCTTAAAAGGAGCTGGAAAAAGCTGGATTGAGATCTCAAGTTGA 2070 0.4155 MDINRIQLALRSCGIFQSIKHAKSLHSCIIKLGFLNHVFPVNNMISVYAKCLHVDDARNLFDEMPHRNIVTWTTMLSAYTNSGSPHVALSLYNQMLQSETEEPNGFLYSAVLKACGLVGDVELGRFVHQHVAQAKMEFDTVLMNALLDMYVKCGSLKDAKQVFYETPLKNSTSWNTLILGHAKSGLVGDALKLFDQMPERDIVSWNSIVAGLASTGSPHALQFVARMHVLGFKLDEFTFPRALKICGQVGEIATGKQIHCYVIKSGFESCSYCISALIDMYSNCKLLDEAMLIFDQFFDNSFVVESLALWNCMLSGYVVNGNYGKALSLIAHIHKTGAYFDSYTFSIALKVCMYFQNLRLASQVHGLVITSGYELDCVIGSILIDLYANQGNINIALRLFEKLPDKDVVAWSSVIAACARSGLDSLALSLFTNMTRMDLEIDHFILTVVLKVCSTLASQRIGKQIHANCLKKGYESEGVIATALIDMYSKCGDIEDALALFGCLSERDTMCWTGIIVGCAQNGRVDEAINLLHKMIESGEKPNEITILGALTACRHAGLVEEAWAIFNSVETDHGLKRCLEHYSCMVDLLGQAGRFEEALKLISDMPFKPDKTIWFSLLGACGTHKNQYLANVVAEHLRATFPEDASVYVMLSNVYATLGMWDSLSEAREALKKVGLKGAGKSWIEISS* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2776 689 Pfam PPR repeat 511 539 IPR002885 -
Amo17g2776 689 Pfam PPR repeat 275 296 IPR002885 -
Amo17g2776 689 Pfam PPR repeat 381 407 IPR002885 -
Amo17g2776 689 Pfam PPR repeat 582 606 IPR002885 -
Amo17g2776 689 Pfam PPR repeat 173 202 IPR002885 -
Amo17g2776 689 Pfam PPR repeat 310 330 IPR002885 -
Amo17g2776 689 Pfam PPR repeat 482 506 IPR002885 -
Amo17g2776 689 Pfam PPR repeat 409 437 IPR002885 -
Amo17g2776 689 Pfam PPR repeat 142 165 IPR002885 -
Amo17g2776 689 SUPERFAMILY TPR-like 466 662 IPR011990 GO:0005515
Amo17g2776 689 TIGRFAM PPR: pentatricopeptide repeat domain 583 606 IPR002885 -
Amo17g2776 689 TIGRFAM PPR: pentatricopeptide repeat domain 309 337 IPR002885 -
Amo17g2776 689 TIGRFAM PPR: pentatricopeptide repeat domain 173 203 IPR002885 -
Amo17g2776 689 TIGRFAM PPR: pentatricopeptide repeat domain 70 98 IPR002885 -
Amo17g2776 689 TIGRFAM PPR: pentatricopeptide repeat domain 511 544 IPR002885 -
Amo17g2776 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Amo17g2776 689 Pfam PPR repeat family 67 115 IPR002885 -
Amo17g2776 689 Gene3D Tetratricopeptide repeat domain 479 689 IPR011990 GO:0005515
Amo17g2776 689 Gene3D Tetratricopeptide repeat domain 124 228 IPR011990 GO:0005515
Amo17g2776 689 Pfam E motif 625 686 IPR046848 -
Amo17g2776 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Amo17g2776 689 PANTHER BNAC03G28070D PROTEIN 83 684 - -
Amo17g2776 689 PANTHER BNAC03G28070D PROTEIN 9 76 - -
Amo17g2776 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Amo17g2776 689 Gene3D Tetratricopeptide repeat domain 3 123 IPR011990 GO:0005515
Amo17g2776 689 Gene3D Tetratricopeptide repeat domain 357 468 IPR011990 GO:0005515
Amo17g2776 689 Gene3D Tetratricopeptide repeat domain 241 356 IPR011990 GO:0005515
Amo17g2776 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Amo17g2776 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 76 - -
Amo17g2776 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 83 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2776 Amo-Chr17 129024924 129030000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2776 1 687 Glycoside Hydrolase AT3G49170 30.229 9.03e-109 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2776 - - gmx:100780678 1040.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2776 17 129024924 129030000 Amo17g2776 17 129024924 129030000 ECH