Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2775 ATGGCGGGCGGTGGCGGAAAGGTGTCGTTCAAGGTGATACTCACCTCTGATCCCAAGCTTCCCTTCAAAGTGTTTAGCGTTCCAGAGGCTGCGCCTTTCACTGCCGTTCTCAAATTCGCTGCCGAAGAATTCAAAGTCCCTCCTCAGACCAGCGCTATCATCACCAACGATGGTGTTGGCATAAACCCTCAGCAGAGTGCAGGGAATGTCTTTCTTAAGCATGGATCAGAACTGCGCCTGATTCCCCGTGATAGAGTTGGAGCTTCTTGCATGTTACGGGGTGTGTGA 288 0.5208 MAGGGGKVSFKVILTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGASCMLRGV* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2775 95 Pfam Ubiquitin fold modifier 1 protein 7 81 IPR005375 GO:0071569
Amo17g2775 95 Gene3D - 5 88 - -
Amo17g2775 95 PANTHER UBIQUITIN-FOLD MODIFIER 1 1 91 - -
Amo17g2775 95 PIRSF Ufm1 1 89 IPR005375 GO:0071569
Amo17g2775 95 PANTHER UBIQUITIN-FOLD MODIFIER 1 1 91 IPR005375 GO:0071569
Amo17g2775 95 CDD Ubl_UFM1 8 82 - -
Amo17g2775 95 SUPERFAMILY Ubiquitin-like 4 87 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2775 Amo-Chr17 129018286 129020342 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2775 K12162 - mnt:21403060 174.866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2775 17 129018286 129020342 Amo17g2775 17 129018286 129020342 ECH
Amo08g0714 08 12621404 12623497 Amo17g2775 17 129018286 129020342 hybridization