Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2711 ATGTCGTTTAGGGTTCCGATCTGCTTCCTCTTTCTTTCACTCCTACTCGCGGCTCCTCAGATCTCCGCCGATGAATCAGCATCGGAGGCCAAAGAGAAGGAGTTTGTGCTRACGTTGGATCATTCTAACTTCTCCGATACCATCAAGAAGCACGACTTCATCGTCGTCGAGTTCTACGCACCTTGGTGTGGCCACTGTAAGAAGCTTGCTCCGGAGTATGAGAAAGCTGCTTCCATATTGAGCAGTCTAGATCCTCCCGTTGTTTTGGCTAAAGTTGATGCCAATGAGGAGAAGAATAAAGAGATCGCAAACGAATATGATGTTAAGGGYTACCCAACAGTCAAGATTCTTAGAAGTGGGGGAAAGCACATTCAAGAATACAAGGGTCCCCGTGAAGCAGATGGCATTGTYGAGTATTTGAAGAAACAGAGTGGCCCTGCATCTACTGAAATTAAATCCGCTGACGATGCTGCCGCTTTCATTGGCGAAAATAAAGTTGTTGTTGTTGGGATTTTCCCTAAATTTTCTGGGGAGGAGTATGAGAACTTTATCGCATTAGCAGAGAAGCTACGTTCTGATTATGACTTTGGTCACACCCTYGAGGCCAAACACCTTCCACGGGGAGAATCATCAGTTACCGGGCCTGTTGTYAGGTTATTCAAGCCATTTGATGAGCTTTATGTTGATTTCAAGGATTTCAAAGCAGAAGCTCTAGAGAAATTTATTGAAGATTCTAGCATCCCTGTTGTGACTGTCTTCAACAATGACCCAAGCAACCATCCTTTTGTTGTCAAATTCTTTAACASTCTTAATGCTAAGGCAATGCTGTTCATCAACGTYACCAGTGATGKTGCTGAAGCKTTGAAATYGAAATACCGTGAAGCTGCTGARCAATATAGATCACAGGGTGTGAGCTTTCTGGTGGGAGATGTTGAAGCTAGTCAAGGAGCCTTCCAGTACTTTGGACTTAAGGAAGAGGATGTWCCTTTGATCATCATACAACATAACGATGGAAAGAAATTTTTCAAACCTAATGTGGAGCCAGATCAACTTACAACTTGGTTGAAGGAATACAAGGAAGGGAAAGTTGCACCATATTTGAAGTCTGAGCCTATTCCTGAAACTAATAATGAACCTGTCAAAGTGGTAGTTGCTAACARTTTTGACGACGTCGTTTTCAAATCAGGGAAGAATGTTTTGCTGGAGTTCTATGCCCCGTGGTGTGGTCATTGCAAAAAGTTGGCTCCAATATTGGATGAAGTTGCCGTCTCATATCAAAATGATGCTGATGTTACCATTGCCAAACTGGATGCAACTTCCAACGATATCCCAAGTGAATCCTTTGATGTCCAAGGTTATCCAACAGTGTACTTCAAGTCTGCAAGTGGRAAGATATCACCATATGAAGGAAAAGCAGCGGTTCCTTTTGGCGGATATAGACACACTATGACACTAAGTTACATGTAG 1467 0.426 MSFRVPICFLFLSLLLAAPQISADESASEAKEKEFVLTLDHSNFSDTIKKHDFIVVEFYAPWCGHCKKLAPEYEKAASILSSLDPPVVLAKVDANEEKNKEIANEYDVKGYPTVKILRSGGKHIQEYKGPREADGIVEYLKKQSGPASTEIKSADDAAAFIGENKVVVVGIFPKFSGEEYENFIALAEKLRSDYDFGHTLEAKHLPRGESSVTGPVVRLFKPFDELYVDFKDFKAEALEKFIEDSSIPVVTVFNNDPSNHPFVVKFFNXLNAKAMLFINVTSDXAEALKXKYREAAEQYRSQGVSFLVGDVEASQGAFQYFGLKEEDVPLIIIQHNDGKKFFKPNVEPDQLTTWLKEYKEGKVAPYLKSEPIPETNNEPVKVVVANXFDDVVFKSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVTIAKLDATSNDIPSESFDVQGYPTVYFKSASGKISPYEGKAAVPFGGYRHTMTLSYM* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2711 488 CDD PDI_b_family 148 244 - -
Amo17g2711 488 Coils Coil 285 289 - -
Amo17g2711 488 SUPERFAMILY Thioredoxin-like 347 465 IPR036249 -
Amo17g2711 488 TIGRFAM pdi_dom: protein disulfide-isomerase domain 40 143 IPR005788 GO:0003756
Amo17g2711 488 SUPERFAMILY Thioredoxin-like 149 248 IPR036249 -
Amo17g2711 488 Gene3D Glutaredoxin 144 248 - -
Amo17g2711 488 Gene3D Glutaredoxin 374 475 - -
Amo17g2711 488 Gene3D Glutaredoxin 249 373 - -
Amo17g2711 488 CDD PDI_a_family 37 140 - -
Amo17g2711 488 ProSitePatterns Thioredoxin family active site. 400 418 IPR017937 -
Amo17g2711 488 PRINTS Thioredoxin family signature 107 118 - -
Amo17g2711 488 PRINTS Thioredoxin family signature 54 62 - -
Amo17g2711 488 PRINTS Thioredoxin family signature 62 71 - -
Amo17g2711 488 Gene3D Glutaredoxin 25 143 - -
Amo17g2711 488 CDD PDI_b'_family 263 359 - -
Amo17g2711 488 Pfam Thioredoxin 380 471 IPR013766 -
Amo17g2711 488 Pfam Thioredoxin 36 142 IPR013766 -
Amo17g2711 488 TIGRFAM ER_PDI_fam: protein disulfide isomerase 36 470 IPR005792 GO:0003756
Amo17g2711 488 ProSitePatterns Thioredoxin family active site. 55 73 IPR017937 -
Amo17g2711 488 PANTHER PROTEIN DISULFIDE ISOMERASE 9 471 - -
Amo17g2711 488 Coils Coil 291 302 - -
Amo17g2711 488 Coils Coil 278 283 - -
Amo17g2711 488 ProSiteProfiles Thioredoxin domain profile. 12 145 IPR013766 -
Amo17g2711 488 SUPERFAMILY Thioredoxin-like 36 146 IPR036249 -
Amo17g2711 488 Pfam Thioredoxin-like domain 172 356 - -
Amo17g2711 488 CDD PDI_a_PDI_a'_C 379 471 - -
Amo17g2711 488 PANTHER PROTEIN DISULFIDE ISOMERASE-LIKE 1-2 9 471 - -
Amo17g2711 488 ProSiteProfiles Thioredoxin domain profile. 358 488 IPR013766 -
Amo17g2711 488 SUPERFAMILY Thioredoxin-like 247 377 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2711 Amo-Chr17 127819522 127822524 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2711 K09580 - gmx:100170705 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2711 17 127819522 127822524 Amo17g2711 17 127819522 127822524 ECH