Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2650 ATGTTGTTTGCAAATATGACGTCATCAGTTCTAACTGCCACTGATTTGCGGCGGATATTTGAGAAGCTTGACATGAATTGCGACGGTTTCGTGAGCCTTGAGGAACTCAATTGGCTCCTCCACAACATAGGCTTCCAATTAACGTTAGATGAATTGGAATCCCTTGTTGAGAAGAAAAGCCTTAACTTGAACGAGTTCTTGTTCTTCTATGACTCAATAATATCCAAGAAGAATTGCAATGACGACGATGATGATAATAATGAAGAGATGGATGATGAGTTGTTGGAGAATGATCTTGTGGAAACGTTCAAGGTGTTTGATTTGGATGGAGATGGATTCATAACGAGCAACGAGCTTCAGTGTGTTCTTAAGAGGCTTGGGTTGTGGGATGAGAGAGGTGGCAAGGATTGTGGTTCCATGATTCGATTCTATGATACCAATTCCGATGGCCAGCTTGATTTTGAGGAGTTTAAGAATATGATGTTCCTCACCATCACCACCGCATGA 507 0.4162 MLFANMTSSVLTATDLRRIFEKLDMNCDGFVSLEELNWLLHNIGFQLTLDELESLVEKKSLNLNEFLFFYDSIISKKNCNDDDDDNNEEMDDELLENDLVETFKVFDLDGDGFITSNELQCVLKRLGLWDERGGKDCGSMIRFYDTNSDGQLDFEEFKNMMFLTITTA* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2650 168 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 9 164 - -
Amo17g2650 168 SUPERFAMILY EF-hand 15 162 IPR011992 -
Amo17g2650 168 ProSitePatterns EF-hand calcium-binding domain. 145 157 IPR018247 -
Amo17g2650 168 Gene3D - 12 73 - -
Amo17g2650 168 ProSiteProfiles EF-hand calcium-binding domain profile. 132 167 IPR002048 GO:0005509
Amo17g2650 168 ProSiteProfiles EF-hand calcium-binding domain profile. 11 46 IPR002048 GO:0005509
Amo17g2650 168 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 9 164 - -
Amo17g2650 168 ProSitePatterns EF-hand calcium-binding domain. 24 36 IPR018247 -
Amo17g2650 168 Pfam EF hand 17 36 IPR002048 GO:0005509
Amo17g2650 168 ProSitePatterns EF-hand calcium-binding domain. 107 119 IPR018247 -
Amo17g2650 168 SMART efh_1 15 43 IPR002048 GO:0005509
Amo17g2650 168 SMART efh_1 98 126 IPR002048 GO:0005509
Amo17g2650 168 SMART efh_1 136 164 IPR002048 GO:0005509
Amo17g2650 168 CDD EFh 98 161 IPR002048 GO:0005509
Amo17g2650 168 Pfam EF-hand domain pair 97 161 IPR002048 GO:0005509
Amo17g2650 168 ProSiteProfiles EF-hand calcium-binding domain profile. 94 129 IPR002048 GO:0005509
Amo17g2650 168 Gene3D - 74 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2650 Amo-Chr17 126017961 126018889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2650 6 162 EF-hand Containing Proteins AT1G21550 46.296 3.65e-39 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2650 K13448 - qsu:111999233 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0694 08 12196896 12197384 Amo17g2650 17 126017961 126018889 hybridization