Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2597 ATGGTGCTCACGTCCTCTGCACGTGACTACGTCAACCGCATGCTGCAGGACATCTCCGGCATGAAGGTCCTAATCCTCGATTCCCAAACGGTGAGTATTGTGAGCGTTGTGTATTCACAGTCAGAGCTTCTTCAGAAGGAAGTYTTCTTGGTGGAGTTGGTGGATTCCATAACCAAGTCYAAGGAGCTTATGTCGCATCTCAAGGCRGTTTACTTCCTTCGCCCTACGACGGAGAACATCCAGCATTTGCGCCGCCAGCTCGCCGCTCCTAGATTTGGGGAGTATCACCTATTTTTCTCCAACATATTGAAGGACACTCAYATTCACATACTTGCTGATTCAGATGAACATGAAGCTGTCCAGCAAGTTCAGGAGTTCTACGCAGACTTTGTTGCAGTTGATCCTTATCATTTCACTTTGCACATCCCTTCAAGTTATATTTATATGCTCCCGGCTGTGGTGGATCCTTCAACACTGCAACGCTTCTGTGATCGGGTTGTTGATGGTGTAGCAGCTGTCTTTTTGGCATTAAAACGGAGACCAGTTATTAGATATCAAAGGACGTCTGACATTGCCAAAAGAATAGCACACGAAGCAAATAAACTGATGTACCAAGAAGAAAGTGGTCTTTTCGATTTTAGGCGAACAGAAGTTTCACCCCACTCGTTGTTAGTGCTTGACAGGAGAGATGACCTTAATTCTTGTTTGTGGCCTTATACTTTCCAGGCTATGGTTCATGAATTGATAGGAATCCAAGACAACAAGGTGAACTTGAAATCCATTGATAAATTTCAAAGGATAGGAGAAATATTGTGCTATTTGCTGTTGCAGGAGGTTGTGTTGTCGTCGGAACAAGATTCATTTTTCAAAGCTAACATGTATGAGAATTTTGGAGATATAGGTATGAATATCAAGCGGCTGGTTGATGAATTTCAGCAAGTGTCAAAGAGCAACCAGAACATCCAAACGATAGAGGACATGGCCAAATTTGTTGACAATTATCCTGAGTACAGAAAAATGCATGGGAATGTGTCAAAGCATGTGACTTTGGTAACAGAAATGAGCAAGATAGTACAACAGCGAAAACTTATGACAGTTTCACAAACAGAACAGGAACTGGCTTGCAATGGAGGACAAGGGGTTGCGTTTGAGGCAGTGACAAATCTACTAAATGATGATAGCATATCAGATGTGGACCGGCTGCGTTTAGTCATGCTATATGCTTTGCGATATGAGAAGGATAGCCCTGTTCAGTTAATGCAGCTTTTCAACAAACTGGCTTCCCGATCTGCCAAGTATAAATCTGGGCTCGTCCAGTTTCTTTTAAAGCAAGCAGGTGTTGACAAGAGAACTGGTGATCTTTTTGGAAATCGAGATCTAATGAATATTGCCCGTAATATGGCCCGTGGGTTGAAGGGTGTTGAGAATGTGTATACCCAGCACCAACCCCTTCTTTTCCAAACCATGGAAAGCATCGTCAAAGGACGGCTGAGAGATGTGGACTACCCATTTGTTGGAAATCACTTTCAACAAGGAAGGCCACAGGAAGTAATCATCTTCATTGTTGGTGGGACAACTTATGAGGAGTCAAGGTGTGTTGCTCTACAAAATGCCAGCAATCCTGGAATTCGGTTTATACTTGGTGGCTCTTCTGTTCTCAATTCTAAGAGGTTTATTAGGGACCTGGAAGAAGCTCAAAGGGTAGCTCGTTTGAACACCAGCATTGTTTGA 1731 0.4321 MVLTSSARDYVNRMLQDISGMKVLILDSQTVSIVSVVYSQSELLQKEVFLVELVDSITKSKELMSHLKAVYFLRPTTENIQHLRRQLAAPRFGEYHLFFSNILKDTHIHILADSDEHEAVQQVQEFYADFVAVDPYHFTLHIPSSYIYMLPAVVDPSTLQRFCDRVVDGVAAVFLALKRRPVIRYQRTSDIAKRIAHEANKLMYQEESGLFDFRRTEVSPHSLLVLDRRDDLNSCLWPYTFQAMVHELIGIQDNKVNLKSIDKFQRIGEILCYLLLQEVVLSSEQDSFFKANMYENFGDIGMNIKRLVDEFQQVSKSNQNIQTIEDMAKFVDNYPEYRKMHGNVSKHVTLVTEMSKIVQQRKLMTVSQTEQELACNGGQGVAFEAVTNLLNDDSISDVDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKSGLVQFLLKQAGVDKRTGDLFGNRDLMNIARNMARGLKGVENVYTQHQPLLFQTMESIVKGRLRDVDYPFVGNHFQQGRPQEVIIFIVGGTTYEESRCVALQNASNPGIRFILGGSSVLNSKRFIRDLEEAQRVARLNTSIV* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2597 576 Gene3D - 361 482 - -
Amo17g2597 576 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 563 IPR001619 GO:0016192
Amo17g2597 576 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 564 IPR036045 -
Amo17g2597 576 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 359 IPR043127 -
Amo17g2597 576 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 3 563 - -
Amo17g2597 576 Gene3D - 2 128 IPR043154 -
Amo17g2597 576 PIRSF VPS45_Sec1 1 573 IPR001619 GO:0016192
Amo17g2597 576 Pfam Sec1 family 22 561 IPR001619 GO:0016192
Amo17g2597 576 Gene3D - 138 563 IPR027482 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2597 Amo-Chr17 125136804 125144208 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2597 K12479 - gmx:100782786 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2597 17 125136804 125144208 Amo17g2597 17 125136804 125144208 ECH
Amo08g0583 08 10653000 10658043 Amo17g2597 17 125136804 125144208 hybridization